RNA id: TU1991912



Basic Information


Item Value
RNA id TU1991912
length 536
RNA type TUCP
GC content 0.51
exon number 2
gene id si:dkey-185m8.2
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 42354556 ~ 42370239 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATTGTCATTCAACCGGCTCTGTGTGATGCCTTTAGAAAATGATTATGACTCTGCATTGTTGACCGAGACTGAAGGAGTAGCTCTTTGCTCATGAATAAAGCCTTCCTATAAAAGAGAGGCTGCAACCAAAGAAAAGAGCAAGAGGAacgagagaaagaagagagagagagaaagaaagaaagaaaagagatgGAGTCACAGGGCGAAGGGTACCCTCCCTTTTCGGTCTCAACTGGTGGTGATGAGAGTATGCAAGGTGTTATGCAGAGAGAGGTGAACCCCTCAACTAGTGCTCCCCCTCTTCCAGAACTTAGGCTAGTCCTGCTGGGAAGGAAAGGAACAGGGAAGAGCTCTGCAGCCAATACCATCCTGGGAGGAATAGGGGGGTTTGAGAGCGGCAGACCAACCGAGGAGTGCTCGAAAAAGCGAGCCGATCTAACCAGGAGACGAGTCACCGTGGTAGACACCCCTGGCTGGGAATGGTACTACCCGCTCAACAGCACCCCCGACTGGGTCCGGAGAGAGACGTTGCGCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1991944 lncRNA upstream 3600 42350763 ~ 42350977 (+) True G1739366
TU1991875 lncRNA upstream 102932 42251422 ~ 42251645 (+) True G1739301
TU1991872 lncRNA upstream 107684 42246311 ~ 42246893 (+) True G1739298
TU1991871 lncRNA upstream 108827 42245530 ~ 42245750 (+) True G1739297
TU1991868 lncRNA upstream 114183 42240118 ~ 42240394 (+) True G1739294
TU1991948 lncRNA downstream 4307 42359634 ~ 42359935 (+) True G1739370
TU1991952 lncRNA downstream 23345 42378672 ~ 42379089 (+) True G1739374
TU1991965 lncRNA downstream 27064 42382391 ~ 42382726 (+) True G1739385
TU1991977 lncRNA downstream 34788 42390115 ~ 42390392 (+) True G1739397
TU1991978 lncRNA downstream 35451 42390778 ~ 42391131 (+) True G1739398
NM_001281349.1 mRNA upstream 67715 42285129 ~ 42286862 (+) False cxcl8c
XM_021577840.2 mRNA upstream 133953 42213444 ~ 42220624 (+) False LOC110500456
XM_021577841.2 mRNA upstream 133953 42213444 ~ 42220624 (+) True LOC110500456
XM_036957875.1 mRNA upstream 169573 42153569 ~ 42185004 (+) False LOC110500450
XM_036957879.1 mRNA upstream 169573 42153569 ~ 42185004 (+) True LOC110500450
XM_021577844.2 mRNA downstream 52323 42407650 ~ 42410829 (+) False si:ch211-1o7.2
XM_021577845.2 mRNA downstream 52604 42407931 ~ 42410829 (+) True si:ch211-1o7.2
XR_002470111.2 mRNA downstream 117940 42473267 ~ 42482530 (+) False LOC110500464
trnak-cuu-149 mRNA downstream 189057 42544384 ~ 42544456 (+) True trnak-cuu-149
trnan-guu-198 mRNA downstream 191740 42547067 ~ 42547140 (+) True trnan-guu-198
TU1991899 other upstream 66077 42285056 ~ 42288500 (+) True cxcl8c
TU1991652 other upstream 456721 41895329 ~ 41897856 (+) True G1739103
TU1991654 other upstream 463210 41888811 ~ 41891367 (+) False G1739103
TU1990529 other upstream 1325441 41024710 ~ 41029136 (+) True G1738119
TU1990461 other upstream 1357257 40993155 ~ 40997320 (+) True G1738057
TU1992021 other downstream 146022 42501349 ~ 42502357 (+) True G1739440
TU1993038 other downstream 900326 43255653 ~ 43327738 (+) True G1740312
TU1993035 other downstream 911887 43267214 ~ 43268143 (+) False LOC110500499
TU1993034 other downstream 912004 43267331 ~ 43268143 (+) True LOC110500499
TU1993101 other downstream 1033862 43389189 ~ 43390299 (+) True G1740366

Expression Profile