RNA id: XM_021577844.2


Basic Information

Item Value
RNA id XM_021577844.2
length 1762
RNA type mRNA
GC content 0.57
exon number 6
gene id si:ch211-1o7.2
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 42407650 ~ 42410829 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAATAGGATCAGGCCCGGATTCCTTCTACCCGAGGGGTTTCTTGGCCacgcctctacacacacacacacacacacacacacaaattgacATCATTTATTTGCCTTCCACACTAGACTGCGATAATGAGCCATGTAAAATATTTCTATATTCTTGGACTGGAACATTAACAATGCGCATGTTTTCAATTCATTCTCTTTTACAAGGACAACTTCTGAATTCTGGAAAGATAAATAAGCCCAGGGTAGGTGGTGGGGTGGTGCTGGTGCGGCGGTTGGTGAAGGCTCCGCCGGACAGCGACATGTTCCAGGCGGCCACCTCCGGGGACCGTGACTGGCTGCGACTCAGCCTGAAGCGGGCGCTGTCCCCAACGCAGCTCGACAAACAGggTCTGACGGTGCTCCACGTGGCTGGCCTACACGGGCAGTTGGAGTGTATGAAGCTGCTGTTGGCATCCCAAGTGGTGGACATAAACGCCAGCTGCCCCCTGGGCCGCAGACCCATCCACATGGTCCTCACTGCCAAGAGCAGACCCCACTCCCATGCCTGCCTCACCTACCTACTGGAGCATGGAGCCCTGCCAAACGTAGCCACTGACACAGGGTTGACGCCCCTCCACCTGGCTGCCACCGAGGGCCTGTGGGAGTGTACCAAGAGTCTAGTGGAGGCGGGGGCAGACACGGGTGCACGAGACAACCGAGGACACACACCTTTGGAACTGGCACGCATCTGGTGCCACAGAAGGAtcgccagGTTTCTGAAGGACTCTATGTGGCAGAAcgagaagaaaagagagatggagaggcgcAAGGCGCTGCAGAACCTTCGGCAGGACCTGTTCAACATGCACAGGAGGGCCGAGAACATAGAGAAGGTGGGGAGACAGAAGTTGATGGAAGAGAAGGTCACGGCGTGGGCCGATAAGAAAGGCCTTCCCCTCCTCTGGGCCCAGCCTATGGCCACATGGAACCAGGCTCACGCCCACTGTCTCTCCCCGGGCCAGAGGCCACAAAGCCAGAGGACCAAGGTCTGCCACAGGCAGCATCCAGGGGCCCCTCCTCGGGAGGCCTGGAACATCTCCCCCAACCCCTCCAAACCCCCGCCGGCCTCTGTCTCCCGGCCCCAGGGGGTGCGTCTGAGCAGCCAGCCCGAGAGGTCCCCTCCAGAGCCCGACCTGAGGCGCAGCATAACTCTCTGCAGGGCCCGTGGGGATGGACGTCCCCAGTACACTGCCAAGTGGGACGGGTCCCCCCAGTCGGTCCCCAACCTGCCCTGGGATGTCCTTCAGAGGGGGCTGTTCTCTGCTGCCTTCCCATCAAGGATTGCCTCGCCCAACCACTTCCAGCCCAACCATGTGCTGGATCTGCCGCGCATCGGCTGCTCCCCAGGACCCAACACCTCTCCCTGGACAGAGGTGGCCATGCACCTGGCTGAGGAGCTGGAGCCTGGCCACTACTGACTGGATGGAGAGGTAGAAGTTGCCCCTAACCAATGATCCAGTCAGATTTATTTCATCCCTCTAAGTGTTAAGGTTAGAATGGCAGgtagggtaatctgatcctagatctgtggttggGGGCAACTTCTACTTTAAGGAGTGGTGGAGATCCACTTTCTCCCAGTCGTACTCTACTGTAATGGAGAGACACTGTACTGACTCTACTGTCACCATTACAGGTGATTGGACAGTGGTGTTCTGCAAAACATAGATTTTGCATATCAGGAGTATTTTTATTATTAAAAGGTGTGATATTTGAGAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1991988 lncRNA upstream 3641 42403714 ~ 42404009 (+) True G1739408
TU1991987 lncRNA upstream 4901 42402315 ~ 42402749 (+) True G1739407
TU1991978 lncRNA upstream 16519 42390778 ~ 42391131 (+) True G1739398
TU1991977 lncRNA upstream 17258 42390115 ~ 42390392 (+) True G1739397
TU1991965 lncRNA upstream 24924 42382391 ~ 42382726 (+) True G1739385
TU1992002 lncRNA downstream 51983 42462812 ~ 42463150 (+) True G1739422
TU1992006 lncRNA downstream 63173 42474002 ~ 42482529 (+) True LOC110500464
TU1992011 lncRNA downstream 68912 42479741 ~ 42480166 (+) True G1739430
TU1992015 lncRNA downstream 80609 42491438 ~ 42491805 (+) True G1739434
TU1992019 lncRNA downstream 86126 42496955 ~ 42497224 (+) True G1739438
XM_021577843.2 mRNA upstream 37411 42354556 ~ 42370239 (+) False si:dkey-185m8.2
NM_001281349.1 mRNA upstream 120788 42285129 ~ 42286862 (+) False cxcl8c
XM_021577840.2 mRNA upstream 187026 42213444 ~ 42220624 (+) False LOC110500456
XM_021577841.2 mRNA upstream 187026 42213444 ~ 42220624 (+) True LOC110500456
XM_036957875.1 mRNA upstream 222646 42153569 ~ 42185004 (+) False LOC110500450
XR_002470111.2 mRNA downstream 62438 42473267 ~ 42482530 (+) False LOC110500464
trnak-cuu-149 mRNA downstream 133555 42544384 ~ 42544456 (+) True trnak-cuu-149
trnan-guu-198 mRNA downstream 136238 42547067 ~ 42547140 (+) True trnan-guu-198
XM_036957872.1 mRNA downstream 158403 42569232 ~ 42586213 (+) False LOC110500468
XM_021577851.2 mRNA downstream 158404 42569233 ~ 42586213 (+) False LOC110500468
TU1991912 other upstream 52323 42354577 ~ 42355327 (+) True si:dkey-185m8.2
TU1991899 other upstream 119150 42285056 ~ 42288500 (+) True cxcl8c
TU1991652 other upstream 509794 41895329 ~ 41897856 (+) True G1739103
TU1991654 other upstream 516283 41888811 ~ 41891367 (+) False G1739103
TU1990529 other upstream 1378514 41024710 ~ 41029136 (+) True G1738119
TU1992021 other downstream 90520 42501349 ~ 42502357 (+) True G1739440
TU1993038 other downstream 844824 43255653 ~ 43327738 (+) True G1740312
TU1993035 other downstream 856385 43267214 ~ 43268143 (+) False LOC110500499
TU1993034 other downstream 856502 43267331 ~ 43268143 (+) True LOC110500499
TU1993101 other downstream 978360 43389189 ~ 43390299 (+) True G1740366

Expression Profile