Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00050670 |
| length | 1366 |
| RNA type | mRNA |
| GC content | 0.54 |
| exon number | 5 |
| gene id | XLOC_025794 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 56366395 ~ 56394018 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0051968 | positive regulation of synaptic transmission, glutamatergic | biological_process |
| GO:0019226 | transmission of nerve impulse | biological_process |
| GO:0098943 | neurotransmitter receptor transport, postsynaptic endosome to lysosome | biological_process |
| GO:0098970 | postsynaptic neurotransmitter receptor diffusion trapping | biological_process |
| GO:2000311 | regulation of AMPA receptor activity | biological_process |
| GO:0006816 | calcium ion transport | biological_process |
| GO:0099590 | neurotransmitter receptor internalization | biological_process |
| GO:0098839 | postsynaptic density membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0032281 | AMPA glutamate receptor complex | cellular_component |
| GO:0005245 | voltage-gated calcium channel activity | molecular_function |
| GO:0016247 | channel regulator activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-120104-3 | Predicted to enable channel regulator activity and voltage-gated calcium channel activity. Predicted to be involved in several processes, including neurotransmitter receptor internalization; neurotransmitter receptor transport, postsynaptic endosome to lysosome; and postsynaptic neurotransmitter receptor diffusion trapping. Predicted to act upstream of or within calcium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in postsynaptic density membrane. Orthologous to human CACNG5 (calcium voltage-gated channel auxiliary subunit gamma 5). |
| ensembl_id | ENSDART00000151099 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00052385 | lncRNA | upstream | 16676 | 56358682 ~ 56360650 (+) | True | XLOC_025793 |
| TCONS_00050665 | lncRNA | upstream | 269417 | 56099256 ~ 56107909 (+) | True | XLOC_025791 |
| TCONS_00052808 | lncRNA | upstream | 723062 | 55646873 ~ 55654264 (+) | True | XLOC_025790 |
| TCONS_00050663 | lncRNA | upstream | 889085 | 55482141 ~ 55488241 (+) | False | XLOC_025789 |
| TCONS_00050672 | lncRNA | downstream | 181060 | 56574659 ~ 56581029 (+) | True | XLOC_025795 |
| TCONS_00050673 | lncRNA | downstream | 225596 | 56619195 ~ 56622872 (+) | True | XLOC_025796 |
| TCONS_00052809 | lncRNA | downstream | 428100 | 56821699 ~ 56822203 (+) | True | XLOC_025799 |
| TCONS_00052810 | lncRNA | downstream | 556356 | 56949955 ~ 56957558 (+) | True | XLOC_025802 |
| TCONS_00052811 | lncRNA | downstream | 1032561 | 57426160 ~ 57480996 (+) | True | XLOC_025806 |
| TCONS_00050667 | mRNA | upstream | 35207 | 56163276 ~ 56342119 (+) | False | XLOC_025792 |
| TCONS_00050666 | mRNA | upstream | 35207 | 56163276 ~ 56342119 (+) | False | XLOC_025792 |
| TCONS_00050668 | mRNA | upstream | 93204 | 56276346 ~ 56284122 (+) | True | XLOC_025792 |
| TCONS_00050661 | mRNA | upstream | 1086689 | 55288202 ~ 55290637 (+) | True | XLOC_025786 |
| TCONS_00050660 | mRNA | upstream | 1086696 | 55288200 ~ 55290630 (+) | False | XLOC_025786 |
| TCONS_00050671 | mRNA | downstream | 181024 | 56574623 ~ 56594285 (+) | False | XLOC_025795 |
| TCONS_00050674 | mRNA | downstream | 252111 | 56645710 ~ 56685946 (+) | True | XLOC_025797 |
| TCONS_00050675 | mRNA | downstream | 305588 | 56699187 ~ 56813923 (+) | True | XLOC_025798 |
| TCONS_00050676 | mRNA | downstream | 482681 | 56876280 ~ 56877918 (+) | True | XLOC_025800 |
| TCONS_00050677 | mRNA | downstream | 511504 | 56905103 ~ 56915709 (+) | False | XLOC_025801 |
| TCONS_00050664 | other | upstream | 893679 | 55483513 ~ 55483647 (+) | True | XLOC_025789 |
| TCONS_00050662 | other | upstream | 1078168 | 55299043 ~ 55299158 (+) | True | XLOC_025787 |
| TCONS_00050635 | other | upstream | 2309687 | 54067523 ~ 54067639 (+) | True | XLOC_025764 |
| TCONS_00050620 | other | upstream | 3548320 | 52828912 ~ 52829006 (+) | True | XLOC_025751 |
| TCONS_00050613 | other | upstream | 3757151 | 52620058 ~ 52620175 (+) | True | XLOC_025746 |
| TCONS_00050682 | other | downstream | 1242775 | 57636374 ~ 57639448 (+) | False | XLOC_025808 |
| TCONS_00050688 | other | downstream | 1432340 | 57825939 ~ 57829919 (+) | True | XLOC_025812 |
| TCONS_00050692 | other | downstream | 1604391 | 57997990 ~ 57998559 (+) | False | XLOC_025817 |
| TCONS_00050699 | other | downstream | 1774924 | 58168523 ~ 58170414 (+) | False | XLOC_025821 |
| TCONS_00050717 | other | downstream | 2308721 | 58702320 ~ 58710755 (+) | True | XLOC_025845 |
