RNA id: TU1992505


Basic Information

Item Value
RNA id TU1992505
length 1487
lncRNA type sense_over
GC content 0.39
exon number 4
gene id c21h4orf48
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 42655361 ~ 42661164 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCGCCTTCTGCCCTTTGAATTAATATTCAACAGAATCGTCTTGAGGTGGGCGTCTTTCGGCAGGCtacattgtttttattttctttaaaatATCACCCACAGTTTCTCTTGACATCTTGCACCGAGCATCAGTATGGTATCGAGCGGCTATTTGCAAGCGGCGATGCTGCTATTAGCGGTGCAGCTCTTGTGTTTTAGGCCAAGTGATGCTGAGCAGGAGGCAGGGACGGTAATCCCTGCTGAAAGTCGTCCCTGTGTGGACTGTCATGCATTTGAATTCATGCAGAGGGCACTACAAGACCTTAAGAAGACTGCTTTCAACCTTGATGCCCGGACTGAGACTCTGGTGTTGAGGGCAGAGAGGCGAGCCCTGTGTGACTGCATGCCCACTAATACCTTGCGCTGAGTGGAGTAGTGATGTGCCCCCCCTATGGCAACCAACCCCACACCCACAATGGCCGGACACTTACTTTTACCCACTACAAACAACGCCTGGACTAGACAGTTGTCTCTCTGAGCTTCCTCCTATGGAATATTGTACCATTTAGTTTGCTAATTTGTACAACAGACACTTTATTTTCTTTGCTAACATATCACTATTGATATTGCAGTGGTTTAATTATTTAAAGATAAGATTTCATTTTATGAGTTTAGATAAGCCAGGCATGCGTTACTATGGCATGTATAGGGCAAAGCCAACAACAGCTAGCCTATTGTCCCAGAACTCATGTCCATGTCTTATGTGAGGGTTTGTCTTATCTGAGGGATTTTGTGAAATAAAATACGATTTACACTTTACACATTTAAGTTAAAGGGAAAAAACACTTTCAATTTGGATGTAACCTATTAGTTGTGCTATAGCGTAGTAGATCTGTAAATAGGTTCAATGGACAGACACCTTTTATTAAATGTGTGCCAATATGATCAGGATAATTAACACATACATAGATGCACGCGAAGCAGCAGCATTATATTCAAAATAGTTGTTAATTCATAATAACATGCATAACATAACATAAGTGTCTTGGGAAGTTATTTTTTATTGGCATGGCAACACCAGGCCTTTAGAATAAGTGTACTTTTTAGGTGTATGTGGTACCATGCATGTTTATAGGGTGTAGGCCTACACTCATCTCAACCAGTTGTTTATGGCAATCAGTTGTCTGAGGCACTTCATCATTTTGTTATATTCATCATATCTTTTGTCTTTATTCTGTCTATCTGAACTGTATGAAGATAAAAGTGTTGGATGATGAAGTGGTCAGGAGAATATAGACAAACAAACGCATATTTACCACTAAGACATAGGGACTGTAGAATATTGACAATGTATTGCTAAAATGGTAACTACAGAGGAGTATTATTACTGATAATAatgctttgtgtttgtgttgttgcttTCTTTGTTTCAAAATGTCAATAAGCTGCTTTTAGTAAAGTCTTGTATGTTTTATTTGGTATTAAAGTCATAACTTTCGTCACTGTA

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1992472 lncRNA upstream 56337 42592986 ~ 42599053 (+) True G1739836
TU1992467 lncRNA upstream 71258 42582533 ~ 42584132 (+) True G1739831
TU1992420 lncRNA upstream 147203 42507949 ~ 42508187 (+) True G1739788
TU1992019 lncRNA upstream 158166 42496955 ~ 42497224 (+) True G1739438
TU1992015 lncRNA upstream 163585 42491438 ~ 42491805 (+) True G1739434
TU1992508 lncRNA downstream 28533 42689628 ~ 42692054 (+) True LOC110500846
TU1992507 lncRNA downstream 31400 42692495 ~ 42694785 (+) True G1739867
TU1992549 lncRNA downstream 68915 42730010 ~ 42730232 (+) True G1739909
TU1992725 lncRNA downstream 87729 42748824 ~ 42749078 (+) True G1740050
TU1992726 lncRNA downstream 89122 42750217 ~ 42750478 (+) True G1740051
XM_021577860.2 mRNA upstream 14109 42633393 ~ 42641281 (+) True faah2b
XM_036957872.1 mRNA upstream 69177 42569232 ~ 42586213 (+) False LOC110500468
XM_021577851.2 mRNA upstream 69177 42569233 ~ 42586213 (+) False LOC110500468
XM_021577852.2 mRNA upstream 69177 42569233 ~ 42586213 (+) True LOC110500468
trnan-guu-198 mRNA upstream 108250 42547067 ~ 42547140 (+) True trnan-guu-198
XM_036957893.1 mRNA downstream 15850 42676945 ~ 42690279 (+) False LOC110500846
XM_021577865.2 mRNA downstream 129509 42790604 ~ 42800548 (+) False LOC110500477
XM_036957892.1 mRNA downstream 129556 42790651 ~ 42800548 (+) True LOC110500477
XM_021577868.2 mRNA downstream 160620 42821715 ~ 42834094 (+) True LOC110500479
XM_036957895.1 mRNA downstream 341591 43002686 ~ 43034963 (+) False LOC110500480
TU1992021 other upstream 153033 42501349 ~ 42502357 (+) True G1739440
TU1991912 other upstream 300063 42354577 ~ 42355327 (+) True si:dkey-185m8.2
TU1991899 other upstream 366890 42285056 ~ 42288500 (+) True cxcl8c
TU1991652 other upstream 757534 41895329 ~ 41897856 (+) True G1739103
TU1991654 other upstream 764023 41888811 ~ 41891367 (+) False G1739103
TU1993038 other downstream 594558 43255653 ~ 43327738 (+) True G1740312
TU1993035 other downstream 606119 43267214 ~ 43268143 (+) False LOC110500499
TU1993034 other downstream 606236 43267331 ~ 43268143 (+) True LOC110500499
TU1993101 other downstream 728094 43389189 ~ 43390299 (+) True G1740366
TU1993150 other downstream 785955 43447050 ~ 43451167 (+) False G1740398

Expression Profile