RNA id: TU1992508


Basic Information

Item Value
RNA id TU1992508
length 2427
lncRNA type sense_over
GC content 0.40
exon number 1
gene id LOC110500846
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 42676945 ~ 42692054 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaaaaactgcccctattgtgatgtcatcaaagCAGTCTGGCCCCTCCCTGCAACAATGGTGGAGAATGCATAGGTGTGTGTGTtaagtttgtgtttgtgtgtgttgagtgtctggttgagtgtttgtgtgttgagcgtgtatgtgtgtgtgtgtgtggttgtgtgtggagGTAGGGTAGATGAAGAGGTGCATTAAACCCACTCACCGCAGCGCAGCACTGCCTTGATGACATCAAGCCTGCCAATTGTAAAATGCAAAAGCAATGCAAGTGTGGCATGCCTCTGTTCCTGGTGTGTGCGTATATACGTACGGTGCCTGCCCTGGAAAAATAATCGGAAAacgacatttaaaaaaaaaaagaaagatatTTTTTAGCTGAACATATAAACAAAAATGTGTGTTTCTTTGTCaagagaaaaaaacatttttttttttgcatgagATGTGTCTTTGAATGAAAATGTCTTAGAGGATACATTgtaccacatggcaagcagtgGAGATAAAATGTTTCATTTTTGTATTAAGTTGATATTATCAATGGACTCTTTTTATCAAGGGAGTGGTGATATCATGCACAGTGAGAAGAATCCTATGGAGTTTGTCCCTGGGTCGTTTTGACAAACGTCAAATAAAGCAGTGAGATCATGTTGACGTATCAGATGTTGGGTCATTCGACTAACTGTCTGCTGTATTATCAGAGGACTTCTCACTGTTCTGACACCCCCCTCTTCCTCATTCAACCATGTGAATTGAGATGTGGAGGGCACAACAAATAAACTAGTTAGCCCAGATTTTTTCTCCTTCTCCAAtttgacctggtcaaaagtagtgcactatatagggaatagggtgcgattcgGAATAGTATGCAATTTGGGATGTACTAAATTATCTAAATTATGATCAATCCCCCCCATCTGAAAAATTCAGAACAGACCTGGGTATAGTATTTTGGCGTGGATCCACCAGAATGTAGGAGGCAGAGGTTAAATGGTGAGGCTATAAGAGCGTATTGTatgccagaggaggctggtgggaggagctgtaggaggacaggctcattgtaatggctggaatggaatagatgAAACGGAGTCAAACGTGTGGCTCCCATATGTTTGATATCGTTCCAATAATTCCATAccagacattacattgagcccttcCTCcttagctcctcccaccagcctcctctggtgttcACTACAAGTGTACACTACATAGTGATGTAGTAAGTGGACTCATGTCTGTTAAAAGATGAATGTGAAGTCTTATCAAACTGAGCCATGAATGCTGCTGTCGCCATTTCAATAATAATATACCCTCTCGTTAAGCATTGTGGGTGATCTCAGCCTAGGCTACTATTTGTGTTCTTGATAAAGGACGTAATATTATACCAAGACTCCGCAAAAGCCTTATGTACTGTAATAATGACATGCTGACATTCAAATATCCCACCAACAATCTATATGGCTTAAGGTAGCGAATGATTCATTTCCTGTTTTAAGTTGTTAGAGAGGAACAGACAAACTACACTGATATGTCACTAGCCTATAATGCATTTTACTGTATTCTGTTTCGCAAAAGGGTCAAGCCTGTGTTTATATGGGGAATGCTATGCTATGCCCTGTTCGGTCTGGTCTTAGTACTTCTTGATTCTGGTAAAGCATACGCAGTATTAGAAAGTAGAAGAAATACTGTatgcaaccaccaccacaactagtGTGATTCTGTAACTTAATAATACTATTCCATACCATTCCACTGAACCTGTGCTGATGTACAATCCaagagaaaatgtttttttttttctgctTTTCTTTTGGTTCTGAGAAAATAGGGAAATATTGTTAGTGTTGACTTGGGAACACAGGAGAATGTTCATGTATTGTTATCTGCAAAGGGTTTCAGACATGTGTGCTGCATCAGAACTAAACGCCTCTCTCATTGGAGCGCTCCTTTATCGAGTGCTTTCCAATCCAAAAACGATCATCCGATCACCTAAATTGCGGCGAAGAAACCATGCAGGCTCACAAAATACTCAATTCATACTTTATCGTAGTCTCTCCCACCTGGAAATACAAGTATGAGACAAAAATCCCTCAACGTCTGTCATCCAGATGTCAAGTTGAACACGCACACTATTGTAGAAGTATAGATATCAAAACCGCACAAATAGTATTCCTGTGAGTATAGGTGTTTTGTCCTGGGCGAGTGCAGATTTCAAAGGCCGTGGAGTTAGTTAATAGCAGACATGAATGTATATGGGTGCCGTTACTAAGGGTCTTTGTTGCGAGAAATTgttaaaacattatttttattttacgaGAGAAAGGATTAAGACAAAAATGACAAAAAGCAGCTAATGGTTCTTCTATTGCTGAGAAAACCACAACATTTGATGTTTAAGAGTGACTGTGTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008080 N-acetyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1992503 lncRNA upstream 28464 42655390 ~ 42661164 (+) False c21h4orf48
TU1992502 lncRNA upstream 28533 42655390 ~ 42661095 (+) False c21h4orf48
TU1992505 lncRNA upstream 28533 42655390 ~ 42661095 (+) True c21h4orf48
TU1992472 lncRNA upstream 90575 42592986 ~ 42599053 (+) True G1739836
TU1992467 lncRNA upstream 105496 42582533 ~ 42584132 (+) True G1739831
TU1992507 lncRNA downstream 441 42692495 ~ 42694785 (+) True G1739867
TU1992549 lncRNA downstream 37956 42730010 ~ 42730232 (+) True G1739909
TU1992725 lncRNA downstream 56770 42748824 ~ 42749078 (+) True G1740050
TU1992726 lncRNA downstream 58163 42750217 ~ 42750478 (+) True G1740051
TU1992777 lncRNA downstream 119830 42811884 ~ 42812200 (+) True G1740095
XM_021577861.2 mRNA upstream 28533 42655361 ~ 42661095 (+) False c21h4orf48
XM_036957894.1 mRNA upstream 28533 42655417 ~ 42661095 (+) False c21h4orf48
XM_021577860.2 mRNA upstream 48347 42633393 ~ 42641281 (+) True faah2b
XM_036957872.1 mRNA upstream 103415 42569232 ~ 42586213 (+) False LOC110500468
XM_021577851.2 mRNA upstream 103415 42569233 ~ 42586213 (+) False LOC110500468
XM_021577865.2 mRNA downstream 98550 42790604 ~ 42800548 (+) False LOC110500477
XM_036957892.1 mRNA downstream 98597 42790651 ~ 42800548 (+) True LOC110500477
XM_021577868.2 mRNA downstream 129661 42821715 ~ 42834094 (+) True LOC110500479
XM_036957895.1 mRNA downstream 310632 43002686 ~ 43034963 (+) False LOC110500480
XM_036957896.1 mRNA downstream 310632 43002686 ~ 43034963 (+) False LOC110500480
TU1992021 other upstream 187271 42501349 ~ 42502357 (+) True G1739440
TU1991912 other upstream 334301 42354577 ~ 42355327 (+) True si:dkey-185m8.2
TU1991899 other upstream 401128 42285056 ~ 42288500 (+) True cxcl8c
TU1991652 other upstream 791772 41895329 ~ 41897856 (+) True G1739103
TU1991654 other upstream 798261 41888811 ~ 41891367 (+) False G1739103
TU1993038 other downstream 563599 43255653 ~ 43327738 (+) True G1740312
TU1993035 other downstream 575160 43267214 ~ 43268143 (+) False LOC110500499
TU1993034 other downstream 575277 43267331 ~ 43268143 (+) True LOC110500499
TU1993101 other downstream 697135 43389189 ~ 43390299 (+) True G1740366
TU1993150 other downstream 754996 43447050 ~ 43451167 (+) False G1740398

Expression Profile