RNA id: XM_036957896.1


Basic Information

Item Value
RNA id XM_036957896.1
length 3221
RNA type mRNA
GC content 0.49
exon number 12
gene id LOC110500480
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 43002686 ~ 43034963 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaaAACAAGCTCAGGAAATAGTGGTGGAGAGAAGAGTTAGTGCGGTAAAGGGGCGGTCCTACTGTACTCAAATGAAGGGATATGTATATTTACCCAATATCTTGCTCACTGCTGAGTCAAACCAAAGCAGCAAGGATACAGCTCGTGTCTGAAGACCAGAAAGGACATTTTTATTGAGGGTCGATTTTGGGATAGGAAGACACAGCCGTGTGGTTTTCAACCAGTTTTGTttgtgagtaaaaaaaaaaaaaggatgctTTAGTCGGGTCTCTCGAGCTCTCGCCTGGAAAAAAGGAAGAAGTGACCGCTATTGTTTTGTGACAGGAGGTTTCTTTCGCAGTATGTCACTGGAACACGCAATTCTTGTTCACTAAATGTACTATTGAATACGTGTAACTTGTTTGCTTAGACGTGTTTAATAAGACGTCAAATAGTGAAAATATATTATAGCACAATGAAATCACAAATGTGCTAGTCGCATTACCGGTCAAACGAGATAGAAAGCTATCTCATCTAATGTTTTGTTGTGGTTGCCCACAGCGCAAACTAGGcatatgtgtttttattttacaaaATTCGTTAGTGCGCAAGCAGCGCACGAGTGCCACattataaatacaaatacattggTATTCTGGACAACAGAAACATGATGATGATACAGAGCTAAAAACAAAGTTTACATAAAGTGGTTGAATAGCTATACCAGTATACAGCAACAAGTCAAAATAACTTGTATCCGATCATCTTCGACAACTTTGGGTGAAGTGTGTTGTGCTGTCTTACCAACGCGCAAATTGAGCCCCTGCGTCCAAGCGCTCTTTAGCTGTCAACTGAGAGCGACCGCAGGCACAGCTGCAGCAGCAAGTGTCAACGAGGACTGAACAACTCTTATCGACAAAATGACTGACGGACCAAGGCAACGAGGATGTTCAGCGGCGTCTGGCGGGGATGCTGGCCCCGAGTCCGGGAAAGAGTCCGGAGAAGGAGGGGTGACTCTGAAGAAAGAGATCGGTCTTGTGAGCGCGTGCGGAATTATTGTTgGTAATATCATCGGCTCTGGGATCTTTGTCAGCCCTAAGGGCGTGATGGAGAATGCTAGCTCAGTGGGTCTGGCGCTGATCGTGTGGATTGTCACCGGCATAATCACGGCCATCGGAGCACTGTGCTACGCCGAGCTGGGTGTCACTATCCCCAAGTCAGGGGGAGACTATTCATACGTCAAGGACATCTTCGGAGGACTGGCAGGgTTCCTGCGTCTGTGGATCGCGGTGCTGGTGATCTACCCCACCAACCAGGCAGTCATCGCCCTCACCTTCTCCAACTACGTCCTACAGCCCCTCTTCCCAACCTGCTTCCCCCCGGAGAACGGACTGCGCCTGCTGGCCGCCGTCTGCCTACtTTTGTTGACGTGGGTGAACTGCTCCAGTGTGCGATGGGCCACCAGAGTCCAGGACATCTTCACAGCCGGCAAGCTGCTGGCCCTGGCTCTCATCATTATCATGGGCATCGTGCAGATCTGCAAGGgCGAGTACTTTTGGCTGGAGCCAGCCAATGCCTTTGATCCCTTCCAGGAGTACGACGTGGGGCTGATAGCCCTGGCCTTCCTACAAGGCTCCTTCGCCTACGGAGGATGGAACTTCCTCAACTACGTCACTGAAGAGCTGGTTGACCCCTATGTGAATCTTCCACGTGCCATCTTCATCTCCATCCCCTTGGTGACGTTCGTGTACGTGTTTGCCAACATCGCTTACGTCACCGCCATGAGTCCTCAGGAGCTGCTGGCCTCCAACGCTGTTGCTGTAACGTTTGGTGAGAAGCTGCTAGGCGTGATGTCATGGATCATGCCCATCTCTGTTGCTCTGTCCACCTTCGGAGGGGTCAACGGGTCCCTCTTCACCTCGTCACGGTTGTTCTTTGCTGGAGCCAGAGAGGGCCACCTCCCCAGTCTCCTGGCCATGATCCACGTGAAGCGTTGTACCCCCATCCCTGCTCTGCTCTTCACTtGTCTGTCCACCCTGTTGATGCTGTGCACCAGTGACATGTACACCCTCATTAACTATGTGGGCTTCATCAACTACCTCTTCTACGGGGTCACTGTTGCCGGGCAGATCGTGCTGCGCATCAAGGCACCCGACATGCACCGACCAATCAGGatCAGTCTGGTATGGCCGGTCATCTACCTATTGTTCTGGGCCTTCCTGCTCATCTTCTCGCTGTACTCTGAGCCCATTGTGTGTGGCCTCGGCATGGCTATCATGCTGACTGGAGTGCCGGTCTACTTCCTGGGTGTCTACTGGGACAACAAGCCTGAATGCTTCAACAGCTTCGTTGccAAGATGACCTACCTGGGCCAGAAGTTCTGTGTGGTGGTGTATCCAGGGGAAACGAAGGGAGCAGGGAACGGGGAGGAGGGCGAGGAGCTGAAGGAGTCCCAGGCTCCTCTCTCGCAAGACGATGGGGAGACACAAAAGTCTGCAGACTGCTAAACACACACCTTTAatagcccccccccacacaccaccaCCGCCCACCAactcctcaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagacacagagaaacacactctTATTGAGGTAGAGTCAGAGTTTCAGGTATATCATTATGGCAGAGAGAGGAGTTAACACTCATAGACTCGGAAATACTCTTAGTGACACACACGGTTTTTATGTGTTCACCCATCTGATTGTATCTTTGTTTCAATCACCAATGTTGTGccaaatagaggagaggaggaggagacctaTATAGACCTATATCCGGTCATCAGTGTGCCACCTTTCAACGCTGCTTATTGCAGAAGACATATCCAACCTGACATCCTCACAGATACACACTCATCTTTTCATCCTCTAATCCTTTCATTTACCCCCTTAACTACTCTTTTTTTCccatcctcctcatcttcctccacACACTCCCTGAACACTCCATGAGTGAGAGAGCGCTGGCCATTTTAAAGTACTCGTACTGTACTGTGGCAGATTCATCATCAGCATTGcttttgtgttttgtttctttTTTGCCACATTTTGAATAGAATTTGCCTTGTCTTACTGAAAACGCACCAACGCTGTATTCCTTTATCAAAACCATCAAATTCAGATGAATTCTTTGAATGTTCTGTTTCAAATACACTAAATACTGTCTTTGATtccaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1992923 lncRNA upstream 14405 42987765 ~ 42988281 (+) True G1740211
TU1992922 lncRNA upstream 17309 42985101 ~ 42985377 (+) True G1740210
TU1992921 lncRNA upstream 17680 42984551 ~ 42985006 (+) True G1740209
TU1992918 lncRNA upstream 20894 42981453 ~ 42981792 (+) True G1740206
TU1992848 lncRNA upstream 86956 42915508 ~ 42915730 (+) True G1740162
TU1992907 lncRNA downstream 123725 43158688 ~ 43161692 (+) False LOC110500494
TU1992905 lncRNA downstream 123857 43158820 ~ 43161692 (+) False LOC110500494
TU1992904 lncRNA downstream 123897 43158860 ~ 43161692 (+) True LOC110500494
TU1992987 lncRNA downstream 134300 43169263 ~ 43169540 (+) True G1740274
TU1992989 lncRNA downstream 136413 43171376 ~ 43171589 (+) True G1740276
XM_021577868.2 mRNA upstream 168592 42821715 ~ 42834094 (+) True LOC110500479
XM_021577865.2 mRNA upstream 202138 42790604 ~ 42800548 (+) False LOC110500477
XM_036957892.1 mRNA upstream 202138 42790651 ~ 42800548 (+) True LOC110500477
XM_036957893.1 mRNA upstream 312407 42676945 ~ 42690279 (+) False LOC110500846
XM_036957894.1 mRNA upstream 341591 42655417 ~ 42661095 (+) False c21h4orf48
XM_021577872.2 mRNA downstream 6803 43041766 ~ 43055080 (+) True gmpr2
XM_021577873.2 mRNA downstream 23549 43058512 ~ 43062374 (+) False LOC110500484
XM_036957898.1 mRNA downstream 23549 43058512 ~ 43062374 (+) False LOC110500484
XM_036957899.1 mRNA downstream 23549 43058512 ~ 43062374 (+) False LOC110500484
XM_036957900.1 mRNA downstream 23549 43058512 ~ 43062374 (+) False LOC110500484
TU1992021 other upstream 500329 42501349 ~ 42502357 (+) True G1739440
TU1991912 other upstream 647359 42354577 ~ 42355327 (+) True si:dkey-185m8.2
TU1991899 other upstream 714186 42285056 ~ 42288500 (+) True cxcl8c
TU1991652 other upstream 1104830 41895329 ~ 41897856 (+) True G1739103
TU1991654 other upstream 1111319 41888811 ~ 41891367 (+) False G1739103
TU1993038 other downstream 220690 43255653 ~ 43327738 (+) True G1740312
TU1993035 other downstream 232251 43267214 ~ 43268143 (+) False LOC110500499
TU1993034 other downstream 232368 43267331 ~ 43268143 (+) True LOC110500499
TU1993101 other downstream 354226 43389189 ~ 43390299 (+) True G1740366
TU1993150 other downstream 412087 43447050 ~ 43451167 (+) False G1740398

Expression Profile