RNA id: XM_036957899.1


Basic Information

Item Value
RNA id XM_036957899.1
length 3583
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC110500484
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 43058512 ~ 43062374 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacatccctggtcatccatactgcctctgatctggcggactcactaaacacaagtgcttcgtttgtaaattatgtctgggtgttggagtgtgccactgGCTAGCCATAAATTGAAATAACAAATACATCGTGACGTCTGGTTTGCCTAATATAAGAAATGTTggatgatttatacttttacttttgatactgaagtaaCGTTATATTTCAGCAAtgacatttaaaaccaaatacttttgaaCTTTTACTCAActagtattttactgtgtgactttcGTTTTTACGTGATTCATATTCTATTAAGGtacagtatctttacttttactcgtATGAAGATTGGGTACTTTTTTTTTATCTAGTGGAAACCGAGGGAAAGAGATCCAGGGCATAAATGAATGGAACTCATGTTAGATGTACAACATAGCCAACAGGGGGAGACAAAGTGCGAGTTTACATGTAAAACCTGAATCCATCCATCCTTTGATCAAAAATAATAATCGGTGGCATGTAGCTAGGGTTGACGcttaaagttagctagctatgtggTCATGGATACGGTGCCCATGTTATGAGAAACAACAGTGAAGCACAgcaaactaacgttagctagccataCTGCGAGTTCGTTTAATGGTATCTATTGGTAAGTACTGTTAGATACATATTTGTTGTTGGGATGATAACAGTCATGTGTAGCGCTAGTTAGCTAACTATGAATCCCAGTTAGCTATAGTAGCTAGCAAatagttagctagcaagctagcattgTTGGTTAACAGTAGCGCGCTGACGCAtgacacgcacacatgcacggaATACATGATAATGACAAAAACACTTGGATGGAattgtagctagctaatttgtccaaaGCAGTTCTAACTATAGTAGTaaactagctagccaactttgTTGTTTAAATTATGAAAATAATATACAAAAAAGGTAGGAGTTTTTAAATGATATATTCATTACCATAAGAGTGCTGTGATGACCAGAACAAAGCGGACAGCAGAGCTGGACAAGCATCCAGATCCAGCTGCTGCTGCTAAGCTCACAGAGAAGAGCCCCGCTGACAGCAGCAAGGGGGGCACAGGGATCATGTCCCCCAAAAGTCAGGGGAGGGCAGGCACAGCATCCCCCTACAATCTGGCTCCGGCTCCCTTCGGCCTCAACCAGAACCACGTGGTGTGTCTGCCTCTGGTCTCCGAGCACCTGAAGCTCCTGTGGGCGTGCTCAGACCAGACCCAGGAACTGGACGGCGTGACTTATCTCATAGAGGCCTTCAACGTGTTCCCATACCCGACCCTGGGGGAGACGGCATCGCTCGCCCAGAGCTGCTCTCTGCATCTGGACCAGGTCAGAGTGTGGTTCATGGTCCAGCGGCTCCGCTATGGGATCAGCTGGGATGCAGAAGAGATCTGTATGGCACGGTGCAAGATGTGCGGACCAAACCAGGCGAAGGAcaaaaaagagaaagaggagaaggtaTTGCCTCCCCTCAGTAAGGAGGATGATGGGAGAAACAGGATCGAACATTCACCTGTCTCCACCTCCAATCAGCTTAGCAGCCTGTCCTTCGAGTCCTCCTCACCCGTTCCTCGAAAAAGCCGTAAACACCACCTTGTTGTTGCACCCAATAACTCCAATCTGCAACAcccttctcctccactccctctgtgCTTAGTGGCGCCCCCCACAACCACAGGGCAAACCCTCGAAGCCCCCGACAAACCCCAGAGCCACTGTCAGGATTTTCACTCAGAGCTGTGGCGGAGCTTCAGCCGTAACACAAATCCTCCGAAGGAGGAGCTCCAGCGTCTGCAGGCCCTCACCAGGCTCCACATGAAGTACATCCGCAAGTGGTTCTGCAACCGGCGTTTCTTGCTCCACCACCGCGTCAAGGCCGACCCAGGGTCTGAAGAGAACGGCCAGTCACAGCCCAACGACCTCCTGTCGTCACAGACACAGCTTATTCAGCGTCTGACACAACCACCACCGCCAACTGACAGCAGGGTCAGACCATCACCAGCGAAGAAAAGGGTCTGTCAAGTAGATGATGTCGACTTCCTAAGCAGGAGCCGCAATGGTAACCCTGACCATGGCAACCCAGCTAACAACACCCACCAGATTAGGTCAAACTTGAAGGTgaaggaaaaagagaaagaaCCAGCGGACGTACAGAAGAAGAAGACGGGAGCAGCAGACAAAGAGAAAACGGCCAGAGCTGGAGCTAAGAGATGGACAAAGAACGTCAAGAAGGAACTGAAGGAGGAGCGGAAAGCGGTGGGGATCACCAAATTCATCGATGACGACGGAGAAGAACAAGTTCTCAAAATGGGCCCGTGGCCGAAGAACAAGACAATAGCCCAGCTGGAGCTCCTGAGACACTTCTTCCTCACCTGCCAGTGGCCCACCAAAGGGGACTACACGCAGCTGCAGCAGCAGACAGGCCTCTCGCGGAAGGCTCTCACCCAGTGGTTCGGAGACACCCGCTACTACGTTAAGAAGGGCATGGAACGCTGGATGAGTGGGGAAGAGCACCAGAAGGTCCTGGCGCAGATTAGGGGGAAGCAGATGCAACAGCAGAGGGACTGGTTGATGACTGAGGAAACCGGTCCATCAGGGTCCTCCTCCGGGTCTTTTGCGTACCGTGACTCATAGTGCTAATGGGGAGGCTGGCAGGGAGGAGGATGGAGCTGGGACTTTGAGACCTATGAATGGCGTGAAGCTGGAGTGACCGCTGGGACAGACTTGGGGTACTCAACAGTATAAAAGGGCTTCTTCTCCTTTGTGCTCTCTCCTCTAGGAGCACTGATCCAGCATGGCCTAACAGGTGAAATTTTATTTGTTGAAACTTGAAATCTGAAACTCACCTGTCTGCAGTGATGGAAAAGGAAGCTGAGTTTGAGTCACACCCCTGCTGTAATGCTGGAGAGGCCTGGAGGGTGCTGAAAAGGGCTACATATTAGGAATTGTCACAAATGAGGCAGCATTCTGTTTTTATGTTACAAGTTGTTATGTTTATGATGTTCTAGTCTACTTTAGTTGTAGCACTATTGAAACTGGCACTTCCTGTTCAGTTATTCATTCAAATGGCAATTCATGTTTCAAGCTCCATCACAATTTTATGCTGGGAAGTTTCTATGACATTGCATTGATGTTCCTTGTTTGATATGTTCAGAGTGTAAAGAATTAGGGAAACTACCAGACCTGCGACAACCTATGTCCTTGAGTGCgtcccaataatctctccttcctcctgaagtgtgcacttgcgCATTCATTTCTCCCCATAAAGTTAAAATCATTGGATTGATGTAGACATGGGCTAGGGGGGAGTCCAttaagggaagtgaacaagtgcacactttatgAGAAGAGAGATTATTGGGACATAGCATAAGGTGTGGCCTTATTGGTAGTAAGAAAgtagatcatttattttgatttcacTAACTCCGCTGTAGCCTGCAGTATCAAAATCTCAGAGCTGGTATGTTGAGTCGTATCTGGTTCTTTGTGTGGTGAACAGGTTGCTTCCCTTTTGTGAATAAAAATAACTGTTCTCCTTGTTCTGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1992923 lncRNA upstream 70231 42987765 ~ 42988281 (+) True G1740211
TU1992922 lncRNA upstream 73135 42985101 ~ 42985377 (+) True G1740210
TU1992921 lncRNA upstream 73506 42984551 ~ 42985006 (+) True G1740209
TU1992918 lncRNA upstream 76720 42981453 ~ 42981792 (+) True G1740206
TU1992848 lncRNA upstream 142782 42915508 ~ 42915730 (+) True G1740162
TU1992907 lncRNA downstream 96314 43158688 ~ 43161692 (+) False LOC110500494
TU1992905 lncRNA downstream 96446 43158820 ~ 43161692 (+) False LOC110500494
TU1992904 lncRNA downstream 96486 43158860 ~ 43161692 (+) True LOC110500494
TU1992987 lncRNA downstream 106889 43169263 ~ 43169540 (+) True G1740274
TU1992989 lncRNA downstream 109002 43171376 ~ 43171589 (+) True G1740276
XM_021577872.2 mRNA upstream 3432 43041766 ~ 43055080 (+) True gmpr2
XM_036957895.1 mRNA upstream 23549 43002686 ~ 43034963 (+) False LOC110500480
XM_036957896.1 mRNA upstream 23549 43002686 ~ 43034963 (+) False LOC110500480
XM_036957897.1 mRNA upstream 23549 43002686 ~ 43034963 (+) True LOC110500480
XM_021577868.2 mRNA upstream 224418 42821715 ~ 42834094 (+) True LOC110500479
XM_021577879.2 mRNA downstream 11911 43074285 ~ 43078374 (+) False tinf2
XM_021577877.2 mRNA downstream 11912 43074286 ~ 43079143 (+) False tinf2
XM_036957903.1 mRNA downstream 11956 43074330 ~ 43079143 (+) True tinf2
XM_021577882.2 mRNA downstream 36363 43098737 ~ 43112481 (+) False efs
XM_021577885.2 mRNA downstream 36363 43098737 ~ 43112481 (+) False efs
TU1992021 other upstream 556155 42501349 ~ 42502357 (+) True G1739440
TU1991912 other upstream 703185 42354577 ~ 42355327 (+) True si:dkey-185m8.2
TU1991899 other upstream 770012 42285056 ~ 42288500 (+) True cxcl8c
TU1991652 other upstream 1160656 41895329 ~ 41897856 (+) True G1739103
TU1991654 other upstream 1167145 41888811 ~ 41891367 (+) False G1739103
TU1993038 other downstream 193279 43255653 ~ 43327738 (+) True G1740312
TU1993035 other downstream 204840 43267214 ~ 43268143 (+) False LOC110500499
TU1993034 other downstream 204957 43267331 ~ 43268143 (+) True LOC110500499
TU1993101 other downstream 326815 43389189 ~ 43390299 (+) True G1740366
TU1993150 other downstream 384676 43447050 ~ 43451167 (+) False G1740398

Expression Profile