RNA id: XM_021577877.2


Basic Information

Item Value
RNA id XM_021577877.2
length 2798
RNA type mRNA
GC content 0.45
exon number 9
gene id tinf2
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 43074285 ~ 43079143 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCCATCACATTACGTCACATCCTGAAAGGAAAGTGTCCTGGACAAGGCGGGAGAAGACATGGTGATTGAGATATAAAAGAACACAGATTGTTTTTCTTCTTAAAATGTCCAAACTTTCAAAGTCAGTGTAGTAGATACAGAACTTCAAGAGTTGCATATTTTCAGTTTGTATAGCTAGTTAGTCACTGTTATTGTAACCTCGTCGTTAACAATATCCAACAATCTCAGAATAAGCACTttgttagttagctaacgttgTTAGCATACAACGTTAACTATCCCAGCTAAAGAAATCGAGCTAACTTTGCCTAAATTCGGACTGGACGATATGGCAACTAAGAAGTTAACTGAAATGGaCATCTCCCTCCCCTTATCTTCCTTACGCCTCCTAGCCCCTCCTCTCCGGCTGGTCTCTGCCGCCATGTGGAAGGTGATAAAGGAACGCGATGTGATGCATTATGGGACGCTGGAGGAGTTTGTGACGTCAACCTGTGAGACAGTCCCTGGCTTGCTCACATCTAGACACCAGGCCAAGCTGGCTCTGGGGCTGAGAGCACGGCTGATCTTAGAAGTGTGTCATGGCCTGGACCCACCAGATCCAGCGGTTATCCTTCCCCAGCTGGACAGGATCCATGCCCTCACTCCTTCCTCTGCACTGAAGAAGGATGTGAAGATTGAGACCGCAGTCACCAACTTGCATGGCCTGGTGGAAGTCCTCCTGAGAGACCCCACAGAGAGAGCACTGTTCTACATGGAGGAGTTTCCTTCAGAGTATGGCCCTCAGTTTGACCAGGAACTGGAGAAACTGTTGTGGGAGTTCCTGCTCAGACTGAACCAACTTCTCCCCGTGCCTAACCTGGCTCAGACGGTGTCCTGGCTCACTGCTGCCCCTCCGGTCCTAGAGGAGTGTGCGAAGGCTGCCTCTCAACCACAGCTCCTGAGGACCCTGCTCCAGCACCAGATCTGCCTGGGTCACCTGGATTTGGCAGCTTCTCTTCCTCCCTGTATGGGCGACTCCATCCTCtcatccctatctctccctccctctggaaGAGCTCAGCAAAGCGAACAATCAGGATCTAAGCCTGCCTTTGTTTCCACCCCAAACCCTCAGTCTTTAACCCCattgaccaatcacagacagacacaaaacaGGTCATTGCCCATCACGCCTGTGATAGGTGGGATTTGCAACGAAGACCTGCCAGTCATGGCTTCAGCCAATAACAGGCCAAGAACTTGCAAGGAAGACGTTACTATCCAATCGGATTCAAGAGAAGTGGAGAAGAAAGCCGAGTCAACGGCAAGGACAAAATATACTGAGGTGGAATCTGAAGAGGACGAGGAGGTGATAGTCgtgagaagagggaggaagaggaggagtgaagagaagGATTTGATGAGTGATACAGATGAAGAGACTGAGAGGGACCTTCGAAGGGACTGTTTGGATCAGTTGGGGATTGCAGGCCTCAAGGTTCCGGAAGACCAGCACCTCTGCTCTTACATCACATCCTGTCTGCTTAACCAACCCAGAGTGCTCATCCCCCGACTGACTTCCACAGACATCATTGCACATGTGAGGTCACAACCTCACAGTCCTTCTTGCAGCAACGAGACACCAACAGCAGGTAGATCTCCATGGGGACAGAACAAGAGTCTGACGATAACTGTGCGTCGGCTTCCTTCGACCCAGCAACGGAAGTTGAATGACAGCTCGTTGACCCTAGATGTGGTGCTTCCAGCATTAGCTGACAAAGAGAACTGTGTGCTTCCTTCAGTTAGCTCTCCCTCCATTGTTCCTCTGCCTCAAATGAGAAGAAGCACAGAAATACTGACCTCACCAGTAACCAGTGACAATGATGACATCATAGGAGATTCAGAGGATGAAGCGACAAAGAATTTCAAAGGCAGGCTGTTTAGGAAGCGCTACTATAGGACCAAGCACGACACCTATGTACCCACCCTCAGGGAGTTCTGGAAGCCCAGCCTGGCCCGACCTGCTGTTTCTCGGCAACGGACACAGATTACACACTCAATAATTCACAGACGTACGGCAAAATCCTTTCACCATCCACAGGGAGCAAAATATGAATTTTGAAACAGGAAGGGTACCATCTGAACTTTTCCAATAGGAACATGTTTCTTACTgcaaaaacattttgctacagttTGGCCAACTGAACACAACCATGGTTGTAAAAGTGAATGATTGGCAGTTTTAGGATTCTTTGTATCTGAATCACTTTGCAATAAGCTTTATTTAAAAACCtgtgacttttattttgaaatcaAGAGGATTAACCTATGTCACCAATACTTACAGCCTGTGTGCTGTCATTGTCAGGAGTTCAGATGTCCCAACACATTTTCTTTTAGGGGTCATACTTATATCTTCAGACGTTGATGGCTGCGATAACTGAGGCAAGAGCTTTCTCATATTGGCTGACAATTTAGGTAATTGTCAAGAGTTCAATGGATTATTTCAGCTCAATATCTTCAGATTCTGATGCCTGGTTGTGATAACAACTTGGAGAAAATATTTTTAACGTATTTTTCAATCAAGTATTGTCAATTCTCTGTAAATGAGTGGGGTTTTAATGTGTACTTTTGTATCTTGTCAGACTTTTCATAACTATTCTAATAACTGTTTAAGCTATAATGTCATTAAAGATTGTCATGAATTAAATGTAAATTAAGCATCTGTCAAGTAGTAAAGTAATACCTTTTAAACATTCAATGTCTTTTTATTACTGTGTAAACTACAAAGTATTAAACTGTTTTGGCTATCTTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1992923 lncRNA upstream 86005 42987765 ~ 42988281 (+) True G1740211
TU1992922 lncRNA upstream 88909 42985101 ~ 42985377 (+) True G1740210
TU1992921 lncRNA upstream 89280 42984551 ~ 42985006 (+) True G1740209
TU1992918 lncRNA upstream 92494 42981453 ~ 42981792 (+) True G1740206
TU1992848 lncRNA upstream 158556 42915508 ~ 42915730 (+) True G1740162
TU1992907 lncRNA downstream 79545 43158688 ~ 43161692 (+) False LOC110500494
TU1992905 lncRNA downstream 79677 43158820 ~ 43161692 (+) False LOC110500494
TU1992904 lncRNA downstream 79717 43158860 ~ 43161692 (+) True LOC110500494
TU1992987 lncRNA downstream 90120 43169263 ~ 43169540 (+) True G1740274
TU1992989 lncRNA downstream 92233 43171376 ~ 43171589 (+) True G1740276
XM_021577873.2 mRNA upstream 11912 43058512 ~ 43062374 (+) False LOC110500484
XM_021577882.2 mRNA downstream 19594 43098737 ~ 43112481 (+) False efs
XM_021577885.2 mRNA downstream 19594 43098737 ~ 43112481 (+) False efs
XM_036957905.1 mRNA downstream 19594 43098737 ~ 43112481 (+) False efs
XM_021577883.2 mRNA downstream 19620 43098763 ~ 43112481 (+) True efs
XM_021577886.2 mRNA downstream 33647 43112790 ~ 43144423 (+) False LOC110500490
TU1992021 other upstream 571929 42501349 ~ 42502357 (+) True G1739440
TU1991912 other upstream 718959 42354577 ~ 42355327 (+) True si:dkey-185m8.2
TU1991899 other upstream 785786 42285056 ~ 42288500 (+) True cxcl8c
TU1991652 other upstream 1176430 41895329 ~ 41897856 (+) True G1739103
TU1991654 other upstream 1182919 41888811 ~ 41891367 (+) False G1739103
TU1993038 other downstream 176510 43255653 ~ 43327738 (+) True G1740312
TU1993035 other downstream 188071 43267214 ~ 43268143 (+) False LOC110500499
TU1993034 other downstream 188188 43267331 ~ 43268143 (+) True LOC110500499
TU1993101 other downstream 310046 43389189 ~ 43390299 (+) True G1740366
TU1993150 other downstream 367907 43447050 ~ 43451167 (+) False G1740398

Expression Profile