RNA id: XM_021577883.2


Basic Information

Item Value
RNA id XM_021577883.2
length 5423
RNA type mRNA
GC content 0.53
exon number 8
gene id efs
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 43098737 ~ 43112481 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTtctcaggagggagagagaaaagaaaaatcTCGTTGGCCACGAATTCCCTCTGCTGAAATAAGGGAATGCTCGATATCTTTATTTTCTGGAGCATTAAGGTGGTTATCAGGAGTGTGATCTAAAGATGACATCACGATCCAGCCCAACTGGCTTTTCTAATTTTCTTGACAGTTACTGTCAACAACACTGAGCCAAGAAGGAGCAGTTCAATCATGCCCTCAACACAGAAGAACCCATTGGGATTTGGCGAGCGAAGAAAGCTGGACATCTCTCAACCTTTGCAGCCTTGAAGGAGGCTGGTGGTGTTGCCCTCGAACACAACTTGGATCCTGTGTTTGGACTCTGCAGCAGTCACCAGTTCACCTCTTGGATATAGATGGAGGACCATGTCTGCTTGTGAGTCTGTTTGACCCAACATACTGACAGGAGCACTGTCTGAGGAAGAGCAAACATGTCCCTCTCAACGGTGCTGGCGAAGGCCCTGTTTGACAATGCAGCAGAGAGCCCTGAGGAGCTGGCCTTCCGGAAGGGAGACATCCTGATGGTTCTAGAACAGGAGCAGGGAGGGGGTCCTGGCTGGTGGCTCTGCTCCCTCCACGGGCGCCAGGGCATCGCCCCCGCCAACCGCCTCCGCCTCCTCCACACCGCCCCCGCCCCAGGGGTCGACTCCAGACCCCCCAGCCGCGCCCCCAGCGAGGACTCTGTGTACCTCTCCCCAGTACCCCTGGCCCGCACGGCAGTCTCCACGGAGGATGTGGATGGGGTCTACCGCACCCCACCTAGCCTGGGGGAGGCCCTGTACCAGAGCCCAGGGGCGGTGCCTGTCGCCTCTAGACCAGGGGTCCTCCGGCAGTCCGAGGTAGGGGGTCGACCCCGCTCCCGCTCCAGCTCCGGCACACGCCCCTGTCCCGATTGGGACGTTGGGGTGACGGGCCGCCCCCGCTCGCCATCTCTCCGGTCCAGAGGCACAGACTCCGCTGGGAGCCTCTACCagaccccctccacccccacagCTCTCGGGCCCCAGCACCACAGGGGTCTGGCTGGAGACCCTGGACCAGAGAATGTCTACCTGGCCCCCGGCGGGATTCCTCGGGCGGTGGGTCTAGCTCCAGAGGGGCCAGAGGACAACACTTACCTGGTCCCCAGGGAGACTGTAGCGGCGGTAGGCCACTCTGACGGCTGTTACCTGGTCCCCAGAGGGATGGTCCTGCCCAGCAAGGAGGTCTACCAGACCCCCACAGGAGGGTTAGTCGGGGGGACTGTGTCGACCCAGGTTACTCCCATCACTACTAGGGTCCTGGAGGCTCAGAGCTTCACCTTTTCACAGATAAACGGAGGCGGGGGAGCCCCCCTTAAGCCCCTCACCCCTCAATCCAAACTGGCACAGGACACCCCTCGGATGATGTACCAGACCCCCACCCCTGTGGGAGCAGGGATTCTCAGGACTCCACCCGTCCTCGCACAGGGATCCCCCAAACCTCAGCTGAAAGGGGTGACCCCCAAAACCCCAGGGACCCCTGGTGGTCAGGGTGGAGTGCCCTCCACCCCTCCCATCACCAGGGGGAAGCTAGCTCCTGCTGCCCCCCTCAGGGGTTCCCCCTTGCTGGCCAGAACAGGACAGGGACATGGCCGGGTGCCTGGATCCCCAAACTTTGCTCGTAAGCCCCCTCCTCCAGCCCCTCCAGTGAGGGGGGTAACCAGAAAAGACTTGCCCCGGTCCGTaatccctgtatccacctctcaGCCTGCCCTCTCCACCCCCCAGTCGACTCCTGTACCCCAGTACCAAGAGAGTAAAGATGGAAGGATGGCGTTGAATGGGCAGAATAAGAAAGGCGAGGAAGGAGAGTGTGCAGATCCTGATGACGACAGCCTCGATGAACAGGTGTATGATACTCCTCCCATGAGTAGGTGGCAGCGGCCAGCCCCAGCAGCGCTGTGTGACGATGACAGCATCTACAACACACCCCGCTCCCTTCCCCCACACACTGACCTAGAGTCAGAGGTCTATGATGTTCCCACCATCATACTTAGCACATCGTCAGAGCCCCAGCAGCAGACTGTCAACGTCCCAACGGCTGTTATTACTGATGAATCGGAGGAGGATGTTTACAGCCTTCCAACCCTTCCTGGCCTACCCCTGGGCCTGGGGGACATGTCCACCATCGCCCACCTAGAGGGGACGGAGAGCGGCCAGGTCTACTCTGTCCCCGGCTCAGGGAAGAGGGCTCCGCTTGGGCTAGGCGAGGGCAGTGACCCGGGGTCCACCACCGAGCCGGACTGTGGCGTCTATGACATGCCCGCTCTCACCCTTGACGTCTTGCCCTCTTCGACGATGTCAACGTCGTCTTCGTCTTCCACACGTCGGCTATCTGTATCCAGTAATGGGTCTGGTGATGTCCAATGGAGGAACTCGCTTTCAGGCCTTGTCCAATCGGTGCTTAGCTCTGCCTCGTGTGCCCCTGTCTCCTCGAGGGATCTGGCAACCTCACTGGCTGAGATCCTGTCCGTCTGGAAGACGAGTCAACCCGACGaggtccctccccctctccaacaGGCTTGGGCCCGTCTCTCAGACCTACTTCCTGCTTTGTCTGCCGGTGGCCACGCCCCTCCGTCAGATACTCTTCTCTCTATGGTCCAACGAGCGCTGGAGGACTCCACCATCCTATTTCAGACCCAGGGGCGGCCCCGCCTTCCTTCCCAGGACTCCCTCTCCCGAAGACCCCTACCCGCCCTGCCCGTAGCTGAGGTGAAACCAGTAGGGAGCAGTATGGGACCACGCAAGGGTAGCTGGATCCAGGAGAGACCcttaccccccaccccccagccgGCGTTCCCTCGGCCCCCCGCACAACCCTCCACTGTGACCATGTCCATCACTGTGGGGCAGAGCGacggagaggaggggatggggaacGAGTACGCAGGAATAGGTCTGACACCCGCCCCGGCACCACTTCCTCTTGGAGACAGTGTGGGATACGTGAAACTGCAGGGAAAGCCAGAGCCTCCCTCAGATGCCCTAACAGAGAATAGGTCAAACCAGACCCTTCACACCACAGAGCCTAGGttgagcccctcccctcctctgcccgtctccctctctctggaggACTCAGAGTTGCTCTCCTTCTATTCTTCCCAGTCTCTGTCCCACCTCTCCTGTCTGGCCGATTCCATTGACGTGCTCTTCCGCACCGTGCAGGGGAACCAACCTCCCCGCGTCTTCGTTTCCCGGGGGAAGAGTTTGATCGTGACGGCACACAAGCTGGTGTTCATCGGGGACACGCTCTCCCGCCTCCTGACCTCTCCTGACCTCAGGGCAAAGGTCACAACCTCAGGTGGGCATCTGTGTCAGGCCCTGAAGGCTGTCGTTGTGGCAACGAAGGGGGCAGCCCAGAACTACCCATCAGTCGCTGCCACCCAGGAAATGGTGAACTGCGTGGCCGAGCTGTCCCAGCATGCCGCAGGCTTCTCCGGCCTGCTGCAGCGCCTCGCGGAAATATCTTGACATTATTTCTTCAACGTCTCTTCTTATAACGTGTTTACAATACATTTTCTCTCTACTTTGAAATGCCTTAGTTGTTGTTACAATGTGTTATCTTTCCAATTGAACAGTTTGACGTTTTAAGTGAGGTTGAAACATTGAATTTCAGTCCAGAAGAAGAACTGATCTGTGGCTCAAATTCCCACCCAGTTAGAttttgtgtgtgttcttgtatgtgtgtgttggttggCTTTTGGTTCTTTTAATACCTAGTCACTTCTGTGCTTTTGGTGCCAAGCACACTTTTCATCTTGTGTGTCCTGATTGATGAACATTGTTTTTGTTTGATCCCTGTTCGTGACATTCAGTGTCCCTTGTGGGCCACTGTATTATTGGAGTCAGACTATTTCCGTTCGGTTGCCATTATTTTCTCTTCCATTGAAATAACTGTTTCTTTTCTTTTATCTTTGCATCCTTATTTATTGTAGGCAACCATCCATCCCCCTCCAAAAATATAAATCGAGCCTCACATTCTGCTGTTTGTTAGTGCTATGGAGGAGAGCAGGGATAACTTGATGAAGGTGCAGTTGGTGGGTCTGTATGTAAACGCTGTGGCAGCTTTACTGTGTGTTTCTGCCTGGGCTTGGTGTTGCATTTGAGAGTCAAATGTAATAAaacaacactttaaaaaaaagtactATAGGATGTAAACTATAGGAGTTTGAAAGATGTCTaaatcagatctgggaccagatcaCTCTTTTACCCCCTGCAGTTTCCTACCTTGCAGTCTGGAAGACAGGGAGTGAAACGAGTGTTTATATATGAGTTAATTATATGAGTGTTTTTAAACAGGATTGAGATATGATAGATGGCACGATTGAAAGAGAACATGAGGGGGGGTACTACTCTTGTGAAAGGGATAATGGTGGAGCAGTAGAGCGCTTAGTCGGTCATGTTTGTTCCCACAGTTAGGCCACCAAGTGGAAAACCTGTATGTAAACTTTTacttctctccacctgtctcgcTTTCCATTCACTCGCTTGTCCCccctttctccttttctcttGATTTCCCACACGCATTTCACCTTTCGTCACACACCCTGGCTTTCCCACACAGCTCTATGTACTAGTTTGGCCATATTCGTTCTTGGGCTACTcctatccaatcctctcagatcctAATAAGTGCATAAGGGGGTAAGAGATAGTGGTTCATTTGGGACTGGGGAGCAGGTTTCTAGGCTTTCGTGTTGTTGAAAGGCACTAATTGCCCCTTCAAACTCAATGCTATCACCCACACCCTCACTGGTACTGCTGTCTCAAAGTCTATGCAGCAGTGGCATGTTGGTGATAGGAGGATAAAATGAACAAAGATGCATCAGTGCCAAGAAAAAGTATGAAGTACTTTCACCAAGCTCTTGTGTTTTGCCTTTGTGCTCTTCCTAGTGGAAGGTAGCAGTATTTCTACAGAATGCCTGCCTGCACAGCGCACACCACATCCATGGCCTGACAGTAGAAAAtaatcatcataataataataataattgtatttattGATAATTTTGTATTTGCTTTATGATCTGCTTGGCTTTAAGTTGCTTTATTTCTTATATGCACGTATTTAACAGGGATGTTTTCACTTCACACAGTGAATTACATTTTACTACAATAATGGTTCAAAAGAACAAGTGGAGAAGAGCCGTTAGTTTGATTGAGCTATAATATTTTTTTGAGACTTTTTTTTTGTACCAGAATATATTTTTGAAAGTTTTTACACTAAAGTGAATTTGTTGGTATTGGCTCCATGGCTAAAAAAGCCATATGGATCTATCCAGTCTACATTTCATGAAAGTTGAACACTACAATGACGCCTGACTATGTTCCCCTCAAAAATGCACAAATACATTTGTACAATTACATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1992923 lncRNA upstream 110482 42987765 ~ 42988281 (+) True G1740211
TU1992922 lncRNA upstream 113386 42985101 ~ 42985377 (+) True G1740210
TU1992921 lncRNA upstream 113757 42984551 ~ 42985006 (+) True G1740209
TU1992918 lncRNA upstream 116971 42981453 ~ 42981792 (+) True G1740206
TU1992848 lncRNA upstream 183033 42915508 ~ 42915730 (+) True G1740162
TU1992907 lncRNA downstream 46207 43158688 ~ 43161692 (+) False LOC110500494
TU1992905 lncRNA downstream 46339 43158820 ~ 43161692 (+) False LOC110500494
TU1992904 lncRNA downstream 46379 43158860 ~ 43161692 (+) True LOC110500494
TU1992987 lncRNA downstream 56782 43169263 ~ 43169540 (+) True G1740274
TU1992989 lncRNA downstream 58895 43171376 ~ 43171589 (+) True G1740276
XM_021577877.2 mRNA upstream 19620 43074286 ~ 43079143 (+) False tinf2
XM_036957903.1 mRNA upstream 19620 43074330 ~ 43079143 (+) True tinf2
XM_021577879.2 mRNA upstream 20389 43074285 ~ 43078374 (+) False tinf2
XM_036957900.1 mRNA upstream 36389 43058512 ~ 43062374 (+) False LOC110500484
XM_021577886.2 mRNA downstream 309 43112790 ~ 43144423 (+) False LOC110500490
XM_036957904.1 mRNA downstream 309 43112790 ~ 43144423 (+) True LOC110500490
XR_005038754.1 mRNA downstream 3420 43115901 ~ 43116019 (+) True LOC118943017
XR_005038753.1 mRNA downstream 6129 43118610 ~ 43118728 (+) True LOC118943016
XR_005038755.1 mRNA downstream 9611 43122092 ~ 43122193 (+) True LOC118943019
TU1992021 other upstream 596406 42501349 ~ 42502357 (+) True G1739440
TU1991912 other upstream 743436 42354577 ~ 42355327 (+) True si:dkey-185m8.2
TU1991899 other upstream 810263 42285056 ~ 42288500 (+) True cxcl8c
TU1991652 other upstream 1200907 41895329 ~ 41897856 (+) True G1739103
TU1991654 other upstream 1207396 41888811 ~ 41891367 (+) False G1739103
TU1993038 other downstream 143172 43255653 ~ 43327738 (+) True G1740312
TU1993035 other downstream 154733 43267214 ~ 43268143 (+) False LOC110500499
TU1993034 other downstream 154850 43267331 ~ 43268143 (+) True LOC110500499
TU1993101 other downstream 276708 43389189 ~ 43390299 (+) True G1740366
TU1993150 other downstream 334569 43447050 ~ 43451167 (+) False G1740398

Expression Profile