RNA id: XM_021577886.2


Basic Information

Item Value
RNA id XM_021577886.2
length 6328
RNA type mRNA
GC content 0.57
exon number 17
gene id LOC110500490
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 43112790 ~ 43144423 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAAGACGTAGTGACGCCTGTTGGAGCTCGAGCGAGTCGACAGAGCGAGTGACAGGAAAGCAAAATGGCGGATGAAGATGTTACGCTGAATGGTAAACCTCTACAATCGCTCCGTGTGGCAGACTTGAAAGCCGCTTTGGAGCAACGATGCCTCCCTAAAAGCGGGGCGAAAAATACACTCATTAAGCGACTGAAAGGGGCTCTAATGTTGGAGAATCTTCAGAGGACCTCCACTCCCCATATTGGGCTCCAGCCGAACTCCCAGATTGGGGAGGAGATGAGCCAAAACAGCTTTATAAAGCAGTACCTGGCTCAGCAGCAGGAGCTCCTCCGccagaggttggagagagaggccaGGGAGGCAGCCGAGGCCGACGAAAGCCCAGCGGGCCCTGAGGAGGAGGAGCACACAGAGGAGGGCAACGACAGCGATTCCTATAACCCTGACAAGCATCGCCCCATGCCCTCCCAGCCCCCACTGACCCGGGCTGaggaagagggtggaggagggccAATGATGATGGGGCACCAGGGCCAAGGGATGATGATGGGGCACCAGGGCCAAGGAATGATGATGGGGAAAGGCCAGGGGATGATGGGCCAAGGGATGATGTCTCGCAGACCAGACTTTGGCCCAGGCTCTGTGCCTCAGGAGTCTCCTGACGCCCCCGGAGGTCCTGGATCCTGGATGCAGCAGCGTCCCTCCCTCCAACATGGCCTCCACCACGAGGAGCCCACCACCCCCTCCCCGCCCAGAGCTGTGGCCTCCCTCTCGGTGCGCGTCCTAGGGGACCCTGAGCGCCAGGGCCTGCCCCCATCCATGCCCCCCCGCGCCCAGACCCAGGAGAAGGAAGGCACCGCCCCAGCGGATGACGACCGACCCGCCCACTCTGTGCTCCACCTCAGCCGCTCCGCCCGGGCAGCAGCTGGCAGTAACCGTGTCCAGGAAGACTGTGACGATGATGATGACAGCAGTGAGGAGGATGAAGATGATTGGGGACCTGCGGCGAGGAGAGGTGGCGGAAGAGGGTTAGCCCCTCCCCCCCATCTCCAGCAGCCTTCCCCCAGCGTGCCAGCGGCCCGAGAGAGATCCAGACGCAAGCTCCAGCCTCCGCAACACATCCCCCCTCAGCAGGTAGTACACCAGCCCCCCATGCAGCTCCGCCAGCCCACCCCgcccccctctccacccccagagctctccttcccccttcccgACACCCCCAAACAGAGCCCGCCCGACATGGATGAGGATCCAGAAGGGGCTGGGGTGTCCGTCCGCCCCCCTCCAGGTGGTCTCCAGAGGCAGGACTCTGACTCCAGCTCCCGATCCAGCAGCCCAGAGCCCCGAGCCAAGCGCCGACCCGGACCCCTCTCCTTGCTGGCCCGCAAGATGGCGTCCGAGGGAGCTTACGGGAAGAGAGGCGAGGGTGCGCCGGCGGACAGCCAGACAGGTCCTCGAGGGGAGGCTTCCAGACCAGGAGATGGAGTTGGCAGCAGCCCAGGAGCTGGAGCAGGACCGGGGGTTGAGGTGGTCATGATCCCTGGGGCTGCTATCACCCACACAggaggcagcagcagcacaggGCACACGGGATTCGTCACTGTACCTGAGGTCCCTGCACCAGTGGTTATGTTTGGATCAGGAGCCCAGTCCCATCCTCTCCTGTCTGTGACAGCTGTCCCCAGCATAACCCTCACAACCGAGCCCCAGGGTCCATCTGGAGAGACGgcacagaagaagacagagaaagaaacaaaGCAGGCggaggaaaaggagaggaagatgaagcaggtggtggaggaggagagtcaCCTGCCGCCATGGCAGCGTGGACGTGACTTGACGCTTCCATCTGCGTCTTCACAGTTTGAGTCTGGGGGGTCAGAGGAGCCTCTGATGGACCAGGGAGACACCCAGAAAAAGTCACCCTTCGGCAGGGACAAACCTCTCTCCTCCGCTTCCGGCTCAGCCATGACGACCACCACCTCCCCACCTGCCATCGCCCCCAAGAAGCCCCGCATGTTCTCCGACACCTCCTCCGGCTCCATGACCTCCCCTCCCAAACCTGTGCAGCAGGGGTCAGTGGTGGTGACCACCCCAGGGGAACTCCCTGAACCCCATTGCATATCTGTGAGACCCCAGGTAGTCCTTGTCTCAGGGGCACAGCAGCACACAGACGACACCATGGAGGTCACCGCGCTGAACAAGGCGTCCGTGGAGAAGCCTGGAtggaaagctggaggagacgatGAGAAGATGGAGAAGGAGCGTGACAGCCTGGCGCAGAAGGAGCGTGCCAGCCACGCGGAGAAGGAGCGTGCCAGCCTGGCGGAGAAGGAGCGTGCCAGCCTGGCGGAGAAGGAGCGTGCCAGCCAGGCGGAGAAGGAGCGTGCCAGCCAGGCGGAGAAGGAGCGTGCCAGCCAGGCGGAGAAGGAGCGTGCCAGCCAGGCGGAGAAGGAGCGTGCCAGCCAGGCGGAGAAGGAGCGTGCCAGCCAGGCGGAGAAGGAGCGTGCCAGCCAGGCGGAGAAGGAGCGTGCCAGCCAGGCGGAGAAGGAGCGTGCCAGCCAGGCGGAGAAGGAGCGTGCCAGCCAGGCGGAGAAGGAGCGTGCCAGCCAGGCGGAGAAGGAGCGTGCCTGCCAGGCGGAGAAGGAGCGTGCCAGCCAGGCGGAGAAGGAGCGTGCCAGCCAGGCGGAGAAGGAGCGTGCCAGCCAGGCGGAGAAGGAGCGTGCCTGCCAGGCGGAGAAGGAGCGTGCCTGCCAGGCGGAGAAGGAGCGTGCCAGCCTGGCGGAGAAGGAGCGTGCCAGCCTGGCGGAGAAGGAGCGTGCCAGCCTGGCGGAGAAGGAGCGTGCCAGCCTGGCGGAGAAGGGAACTTCTAAACCCGGGGAGACCAGGAGAAGGGGACCTGAAGAGACTGTTGAGGTTGAGCCCATGGGACCTGTTCTACCCCCTTCTTACCCAGGTaagggagaagatgagaggaagGGGAAGGAAGATGAGAGGGTGTGGAGGAAGGAAGATGAGAGGAAGAAGGAAGCAGAGCGAGGCAGGTGTGGGGAGAGGGCGAGGCACAGGAGGTCATCTCCCTCTAGTGGTGGCGACTCTTCATCCTCGGACTCTGGATCCTCTTCGTCACATTCTTCTGGCTCCACCTCCTCCCAGGACAAAAAAAAGAAGACTGACACAGGAAAAGGAAGAGGGGATGAAAAGAGAAGACTGTacaaaggaggagagaagaaacaATCTGCCAGgGAGGTAAAGCAGTCTTCCCTGTCAGAGCCATCTGGCCCTATGGAGGTGGAGAGGCCAGACCCAGGCCAGACCCAGCCCACCCCTGTCGGGGACCCACAGAACAGTGAGGGCTGCATGGAGGAGagCACCACTCCTAAAGCGTTCGCTGCACGCAAGATCTCCTTGACCACAGGCAGTAAGACGTCTCCAgagggagcagcagcagcaggggggGAGGCAGAGTCCGGGACCGctgctgggaggaagaggaggtggggatCCAGCACGGCCGTCAACGCCAAGAAACCATCCATCAGCATCACCACAGACTCACTCAAGTCTCTGATCCCAGACATCAAGCCCAGTCAGGATGCTGTGGTGGATCTCCACCCTGATGACATCCAGTTGTCTGGGGACGAGGACACCACCAGGGAGGACCAGGGCCCGGACAAGGGCCTCAAGATCAGACGCACTGTCACACAGGTGGTCCCAAGTGAAAACCAGGAGAATGGCCAGGGAGAacaagatgaggaggaggaggaagaggaggagaagaaacaggagcatgacagagagaggacacagaaagagaagaggaaggacagctaCTCAGAAGACACCATGGAGTCTCAGTCCTCCGCTACGCACGACACCGATGCTAAGAAAGtcactCCCAGTGATACGCTGGTGCGTCGCTCCATCAGCCAGCAGAAGTCAGGTGTGTCTGTCACCATCGACGATCCGGTTCGCACCGCCAAACAGCCATCTCCGCCCAGAGGCAAAGTCTCCAACATCGTCCACGTCTGTAACCTGGTGCGACCTTTCACCCTGGGGCAGCTGAAGGAGCTGCTGAACAGGACAGGCTCAGTGGTAGAGGATGGCTTCTGGATCGACAAGATCAAGTCTCATTGCTACGTCACTtACTCCAGCACAGAGGAGGCTGTGGCCACACGAGCTGCGCTCCACGGGGTGAAGTGGCCCCAAAGCAACCCTAAGGTCCTCAGTGTGGACTTCTGTGAGCAGAACGAGCTGGACTTTCACAGAGGCCTACTGGCCGTGGATCCCAGAGAGGAGCACCGCCCCCAGCCTGGTGTGGGTCCTGGAGGACCCAAAGTCCGACCGGGCGTGCTGCCCCCTCTGATGGACGGGCGCGGGGACCGCGGCGTGGTCGGAGGGGTGCGGGACCAgtgggcggagagagagagggagatggaacgCCGGGAGAGGACCAGGGCGGAACGTGAGTGGGACCGGGACAAGGTTCGAGACTTCGGAGGcaaaccaggagaggagagggagagggggaggagatctCGCTccctggatagagagagaaggcggAAGGAGAGGGACGGCAGGGAGAAAAAGGCTGACAAAAAGGATGAGCCTCCTGCCAAATTACTAGATGACCTCTTCAATAAGACCAAAGCAGCTCCCTGTATATACTGGCTCCCTCTCACTGAAGaacagGCAAACCAGAGGGGAAAAGAACGGGAAGAGCGACagaaagaacgagagaggagGCGGAAagaacagcaggaggaggaggacaagaagcgagaggaggagagaaaggagagaattaaaagcagagagaaggagggaggagctgCGGTAAGCACTGGAAGTGTGAGTGTCCGGGgatctgagggagagagggagcgtgggagggagagagagggggagaagaggagggacagTGGTGGATTCAGACCCAGAGGTCCTGATACTAAACCCTCTGCTGGGTTCCGACGCTCCCGTAGCCGTAGCAACCCCCGTGACAAACGCCGTTGAGTGTTCAGTTTGAcggagtgagagagatggggaggaggaaaaAAGGATGGATGCAGTCCCTCATTCAACATACAATTGGAACACAGCAGAAAGAGATTTCTAGTCCCCCTCCTTTACATTAAAACCACTTCCATAGTCTTCAGGTTAACAGGCTGTTCCTCTTCTGGCTATCCTGTCCTTTGGGCCAGGGAGACTCCTATTTAGAAAACCCCAAATCCTCACTCAGTaatgctgtctgtctctcacatgACCATAAAAATCTACATGTATGGACTTTGGTCACATGTTGATAGTTTAGTGAACTGAAAAATGTCTgcctccaaaatggcaccctatttcctatatgaTGGCCcccgtcaaaagtagtgtactatatagggaatagatatggtgacattttcgctctccctcttcctcctatAGCTGTCTCATCTGTCTCAAGCTTCTCATATGAAGCAGTCCAGAGGCCTATTCTGAGCTCTGGAAATTCTCATGCATTTTAACCAGAAATGGAAATAAAGGGTGGAGGTTTGCCTCGAGGCCGAGTCTTGTTCCACCAATCTCTGCGGGCACACAGTAATAAGACTCTTCCCTGTAATAATCCATTTAAAAATAGCAGCCCAGTTTACCAACCCCCAAATGTGTTCTAGAATCAATTTTAGTATTTCAAAAGTTATTTTTTCTACGACCGGTACCAAGGCCCTTTGTAGGGTCATGTGAAGGTTATTTTTTCTGCTTTGACGTTTTATTATGATGAATCATGTAAATCTCAGCCTTGGATGGTTTTTGtgtgttctagtgtgtgtgtggtggtgctctgctctccctctctccacacactAAGGTTCAAGTTGGTTAATGTGTCATTACACTGAAAGCAGCATATGTTTAAGAAAATTAGGAAACTATCTTTTTGCCTTGTCAGAGGGGTAGGGACATTTTTGTGTTGGGTGGGGGGCTGATTTCATTTGCGCACACTTGGCATGTATACGGTTCTTTTTAGGTTGTTTGGGTAGGGGGAGTCCAAACGCACTGAGAGAATCCGTGTGGCACGATGTGAAACTGTCCCAACATGTGAAACTATCCCTTTCTTGCTCTCTTCCTTCTTATTCACTCAGTGTACCCACGACCCTCCCAGTTCTTTTTGTAAATGAATCAGACATCGGATGAGTTTAACTTAGATTATTACTGTTTTAATATTGTTTTTAATTAGTTTGAAACTGATTCTTATTTGGCTCTTTTTTTTCTCCTGTAAGTGCTGAATGTACAAAgaattcaaaataaatgtaaaagttTAAATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1992923 lncRNA upstream 124509 42987765 ~ 42988281 (+) True G1740211
TU1992922 lncRNA upstream 127413 42985101 ~ 42985377 (+) True G1740210
TU1992921 lncRNA upstream 127784 42984551 ~ 42985006 (+) True G1740209
TU1992918 lncRNA upstream 130998 42981453 ~ 42981792 (+) True G1740206
TU1992848 lncRNA upstream 197060 42915508 ~ 42915730 (+) True G1740162
TU1992907 lncRNA downstream 14265 43158688 ~ 43161692 (+) False LOC110500494
TU1992905 lncRNA downstream 14397 43158820 ~ 43161692 (+) False LOC110500494
TU1992904 lncRNA downstream 14437 43158860 ~ 43161692 (+) True LOC110500494
TU1992987 lncRNA downstream 24840 43169263 ~ 43169540 (+) True G1740274
TU1992989 lncRNA downstream 26953 43171376 ~ 43171589 (+) True G1740276
XM_021577882.2 mRNA upstream 309 43098737 ~ 43112481 (+) False efs
XM_021577885.2 mRNA upstream 309 43098737 ~ 43112481 (+) False efs
XM_036957905.1 mRNA upstream 309 43098737 ~ 43112481 (+) False efs
XM_021577883.2 mRNA upstream 309 43098763 ~ 43112481 (+) True efs
XM_021577877.2 mRNA upstream 33647 43074286 ~ 43079143 (+) False tinf2
LOC110500494 mRNA downstream 14434 43158857 ~ 43161693 (+) False LOC110500494
XM_021577891.2 mRNA downstream 59116 43203539 ~ 43219682 (+) True LOC110500496
XM_036956512.1 mRNA downstream 77916 43222339 ~ 43232208 (+) True LOC118942803
XM_021577892.2 mRNA downstream 90223 43234646 ~ 43245107 (+) True LOC110500497
XR_002470116.2 mRNA downstream 122634 43267057 ~ 43268142 (+) False LOC110500499
TU1992021 other upstream 610433 42501349 ~ 42502357 (+) True G1739440
TU1991912 other upstream 757463 42354577 ~ 42355327 (+) True si:dkey-185m8.2
TU1991899 other upstream 824290 42285056 ~ 42288500 (+) True cxcl8c
TU1991652 other upstream 1214934 41895329 ~ 41897856 (+) True G1739103
TU1991654 other upstream 1221423 41888811 ~ 41891367 (+) False G1739103
TU1993038 other downstream 111230 43255653 ~ 43327738 (+) True G1740312
TU1993035 other downstream 122791 43267214 ~ 43268143 (+) False LOC110500499
TU1993034 other downstream 122908 43267331 ~ 43268143 (+) True LOC110500499
TU1993101 other downstream 244766 43389189 ~ 43390299 (+) True G1740366
TU1993150 other downstream 302627 43447050 ~ 43451167 (+) False G1740398

Expression Profile