RNA id: TCONS_00052809


Basic Information

Item Value
RNA id TCONS_00052809
length 505
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id XLOC_025799
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 56821699 ~ 56822203 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCAAGACAGGTGACAGGTGAAGAAATTATTGGCAAATTTCATCATTCACATCGACTACCAAAGGTAAGGTAATGCTTGTCATTTCCCCCAAAATACATTAGGCACAATCAACCTTAAAATACAAGACTTTTGTTTTCTTGTGTGTAGGGTGTGAGATGGCTTTTCATCACAGGATCTCGTTGTTACTCATCTTCTCAAGTCCAGTTGGTAAATTGTTCTTGAGCTGCATCTGTTGAGATATAGAgcaaggtttatatatatatatatatatatatatatatatatatatatatattttattttattttttttttttaccgtaaacAGTAAAAGTTTATTAAGTGTTTAATGCAATTTAATTTGGAATATCTTTATCTGCTCTTACAGTTTTACCAGATTCATGTGACAGTCGGTGCCTGGCAAAAAAACTAATTGATAAGAAAGAGATGATTGCGCCACAGAACATTGACTGTTCTGTCACTGTAAACATCACATCAGTGCAGTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00050673 lncRNA upstream 198827 56619195 ~ 56622872 (+) True XLOC_025796
TCONS_00050672 lncRNA upstream 240670 56574659 ~ 56581029 (+) True XLOC_025795
TCONS_00052385 lncRNA upstream 461049 56358682 ~ 56360650 (+) True XLOC_025793
TCONS_00050665 lncRNA upstream 713790 56099256 ~ 56107909 (+) True XLOC_025791
TCONS_00052808 lncRNA upstream 1167435 55646873 ~ 55654264 (+) True XLOC_025790
TCONS_00052810 lncRNA downstream 127752 56949955 ~ 56957558 (+) True XLOC_025802
TCONS_00052811 lncRNA downstream 603957 57426160 ~ 57480996 (+) True XLOC_025806
TCONS_00052812 lncRNA downstream 612058 57434261 ~ 57436304 (+) False XLOC_025807
TCONS_00052813 lncRNA downstream 613179 57435382 ~ 57436304 (+) True XLOC_025807
TCONS_00052814 lncRNA downstream 814171 57636374 ~ 57641090 (+) False XLOC_025808
TCONS_00050675 mRNA upstream 7776 56699187 ~ 56813923 (+) True XLOC_025798
TCONS_00050674 mRNA upstream 135753 56645710 ~ 56685946 (+) True XLOC_025797
TCONS_00050671 mRNA upstream 227414 56574623 ~ 56594285 (+) False XLOC_025795
TCONS_00050669 mRNA upstream 427681 56366395 ~ 56394018 (+) False XLOC_025794
TCONS_00050670 mRNA upstream 428100 56377326 ~ 56393599 (+) True XLOC_025794
TCONS_00050676 mRNA downstream 54077 56876280 ~ 56877918 (+) True XLOC_025800
TCONS_00050677 mRNA downstream 82900 56905103 ~ 56915709 (+) False XLOC_025801
TCONS_00050678 mRNA downstream 82900 56905103 ~ 56918442 (+) True XLOC_025801
TCONS_00050679 mRNA downstream 215830 57038033 ~ 57174041 (+) True XLOC_025803
TCONS_00050680 mRNA downstream 411890 57234093 ~ 57257075 (+) True XLOC_025804
TCONS_00050664 other upstream 1338052 55483513 ~ 55483647 (+) True XLOC_025789
TCONS_00050662 other upstream 1522541 55299043 ~ 55299158 (+) True XLOC_025787
TCONS_00050635 other upstream 2754060 54067523 ~ 54067639 (+) True XLOC_025764
TCONS_00050620 other upstream 3992693 52828912 ~ 52829006 (+) True XLOC_025751
TCONS_00050613 other upstream 4201524 52620058 ~ 52620175 (+) True XLOC_025746
TCONS_00050682 other downstream 814171 57636374 ~ 57639448 (+) False XLOC_025808
TCONS_00050688 other downstream 1003736 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050692 other downstream 1175787 57997990 ~ 57998559 (+) False XLOC_025817
TCONS_00050699 other downstream 1346320 58168523 ~ 58170414 (+) False XLOC_025821
TCONS_00050717 other downstream 1880117 58702320 ~ 58710755 (+) True XLOC_025845