RNA id: XM_036956512.1


Basic Information

Item Value
RNA id XM_036956512.1
length 2505
RNA type mRNA
GC content 0.53
exon number 14
gene id LOC118942803
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 43222339 ~ 43232208 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAAGCTCGTAGCTGTTCGATCTACTGCTGATGTCATGTCAGTCCAACAGATCCGTCTCTGTGATCTCTTCCCCGAGATGAGGCTTCTGTGGAGGGGCGGCTCCTGTGGAAGGGCTATGATTATGCCTTCACCCCCCTCCCTCAGCAGGCCGTGGGTTtggatggtggtggtggtcatATGGCTCCCTGGTGCTCTGGAGAAGTGTATCTTTGATGAGGTTCAGCAGTCGGTCACAGTGGTCACCACACCCACGGATCCAGACGGACCTCACCCTAAGACGACGGCCAGTAACAATGTTGGGCTTCAGACTCGACTTACTGCTTCAGAGGACACAGCTAATCCTTTTCAAATTCCTTCATTTGCGCTTCAACTTTCTTCATCCCGGAGACACCACAGGAAGCGCACAAGAGAGCTGGCTCCACCCACAAACCATCCACAGCCAATCAGGATCCACACCTGGGTTCCGAGGGATAGCCCTGCCCTGTCTCAGGTGGAAAGCGAGAGACTGGAGCCAGCAGTCAGGGAGGCTGTGGGCATCGTGTCCAACTTGCTGTCAGTAAACAGAGTCCCTGGTCATCTGCTGCTCAGCAGAAACATCAACAAGTACTGCAAGTTCATATGGCGGAACGCCAGCGCTGCCAACTATAACAAGTGTGGCCGAGCCAATGAGAACTACAGGACGGAGACCTGTCTGGATGTCATTATCCCAGATGATCACCTGAGGGGTTGTTCCGTGTACTCAGAGCCTGATGCACCAACCATGACTGTGATAAGGCCTGAGGGGGCGGGACTTCCTGACACTGACTTCCTACTTTACCTCCACGCGCAGAGCACCGACAAGTGTCGAGCGGAGCATATATCCCAGCCCAGTGTGTTGGCCTATGCAGTGCACTGCCAGACTGACTCCCAGGGTCGACCTCTGGCTGGAGTGGTGGTCATCTGTAGGGACAGACTGACTGGGGAGGGATATAGCCACCAAGGCACTGTGCAGACAGTGATCCATGAGTTGTTCCATGCATTGGGATTCTCCAAAGAACTCTTCAGCACCTGGAGAGACTGCTCCTACTCACAACCTGGGATGGGCTGCTCCCCCTGGGGTCAGGTGACTAACACAGATGAGACAGGTCAGGTCAGGATCTACACCCAATCAGTGATCAGAGCCCTGCAGGAACACCTGTTATCTACTGACCCTGACCTTGGAGGACCACTGGAGAACCTGGATGTAGGTTCTAGTGGTCTGTCCTCTCACTGGGAGTCCAGGGTGCTACAGGGTTCCATCATGGCTGCAGCCCTGGGGGATCCAGCTGTGGTGCGTGTCGACCCGGTCACCCTGGCCGCCCTACAGGACACGGGCTGGTACTCTGTCAACCACAGCCGAGCACAGGGCCTGGTGTGGGGAAAGGGTGAGGGAGCAATGTTTGGATTACTGTCCACCTGCCATGACAACTCCTCCTCATTTTTCTGCACAGGCAGTGGTTTAGGGTGTCATTATCTTCACCGCCACAAGGGGGAGTGCCAGACTGACGCTCACCTGGATGGGTGCCGCATTTACAAACCTCTAATGAGTGAGTGCTGGaaagaggagaatgagagagagactgaaacagaGTGGAGTGGAGAGTTGTACCGTATAGACAGCCGATGCTTCTTCTCTAACCTGAGCagagagaatGTCTCCCTGTCCGTCAGCGACTCTGTGGTGGGGCGTTGTTATAGACACAGGTGTACTGGGCTGAACCGGTATCAGATACAGGTGTCTGGCTCTGACTGGTTGGATTGCCCAGTAGGAAGCACCATTGAGGTGACAGGTTACAGGGGGCTAGTTGCATGTCCCGACAAGAGGTTGTGTTATTACCCTGACATTGGTCTCTCCATCGACAACCAGGACCCCCACTCTCCAGCTGCCTCTACTAAAGGCACAGTGACTACTGAGAACGATCCCCTGTTACATCAGAACACAATCCCTGACCCGAGCCTGACCTTTGACCCTGCCGCTACGTGTGCAGAACCAGGGGTCAGTACAGACACCACGTTGGCTGCAGTCCTGGGGGTCAGTGCTGCTGTCTGTCTCCTGGCTGCCCTGATGGTGGCCTACAGGAGGTACCGCTTTTCCAGAGTCAGGGTGCATGCTGCCCCTGAGGCCCCCAGTGTTCTGCAGTTGCACTCGACCCAAAGTGATTCAAATAACTGCTAATGGAAACTGGGTGTCCATTATAGCACAGTCTTGTGCACGCACTGGTGTAAATGGTTACTTAATCAAGTAGGTGGTGTTTGTTCATTATTTATCAGAGGGGGAAATTGACTATTTGTTAAGTGTTGAACTGTACAAATGAAAAAAGTACAATAGAGTAAAGAGCAATGCGATGCTGAGGTGTTCTAATTGTCCCCTGGATTTGTTGTTCAACATGGATTTAGCTTTAACACTATGTTAACCTGTAATAACAATGAATTATGTGAGCGTTTTCTGTGTCTTATCCCTGTGGTATACATTTTACTCATACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1993024 lncRNA upstream 19713 43202422 ~ 43202626 (+) True G1740301
TU1993022 lncRNA upstream 22050 43199907 ~ 43200289 (+) True G1740299
TU1992989 lncRNA upstream 50750 43171376 ~ 43171589 (+) True G1740276
TU1992987 lncRNA upstream 52799 43169263 ~ 43169540 (+) True G1740274
TU1992904 lncRNA upstream 60647 43158860 ~ 43161692 (+) True LOC110500494
TU1993068 lncRNA downstream 96187 43328395 ~ 43328602 (+) True G1740335
TU1993069 lncRNA downstream 96695 43328903 ~ 43329165 (+) True G1740336
TU1993070 lncRNA downstream 97862 43330070 ~ 43330342 (+) True G1740337
TU1993072 lncRNA downstream 99922 43332130 ~ 43332567 (+) True G1740339
TU1993073 lncRNA downstream 101268 43333476 ~ 43333693 (+) True G1740340
XM_021577891.2 mRNA upstream 2657 43203539 ~ 43219682 (+) True LOC110500496
LOC110500494 mRNA upstream 60646 43158857 ~ 43161693 (+) False LOC110500494
XM_036957904.1 mRNA upstream 77916 43112790 ~ 43144423 (+) True LOC110500490
XM_021577892.2 mRNA downstream 2438 43234646 ~ 43245107 (+) True LOC110500497
XR_002470116.2 mRNA downstream 34849 43267057 ~ 43268142 (+) False LOC110500499
XM_021577894.2 mRNA downstream 36402 43268610 ~ 43278166 (+) False LOC110500500
XM_021577895.2 mRNA downstream 36402 43268610 ~ 43278166 (+) True LOC110500500
XM_021577896.2 mRNA downstream 54982 43287190 ~ 43299305 (+) True LOC110500501
TU1992021 other upstream 719982 42501349 ~ 42502357 (+) True G1739440
TU1991912 other upstream 867012 42354577 ~ 42355327 (+) True si:dkey-185m8.2
TU1991899 other upstream 933839 42285056 ~ 42288500 (+) True cxcl8c
TU1991652 other upstream 1324483 41895329 ~ 41897856 (+) True G1739103
TU1991654 other upstream 1330972 41888811 ~ 41891367 (+) False G1739103
TU1993038 other downstream 23445 43255653 ~ 43327738 (+) True G1740312
TU1993035 other downstream 35006 43267214 ~ 43268143 (+) False LOC110500499
TU1993034 other downstream 35123 43267331 ~ 43268143 (+) True LOC110500499
TU1993101 other downstream 156981 43389189 ~ 43390299 (+) True G1740366
TU1993150 other downstream 214842 43447050 ~ 43451167 (+) False G1740398

Expression Profile