RNA id: XM_021577900.2


Basic Information

Item Value
RNA id XM_021577900.2
length 5313
RNA type mRNA
GC content 0.44
exon number 12
gene id LOC110500503
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 43305093 ~ 43323874 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAAGCGAGGTAAGGTGAATCTAAATCGAAACTGAAATTTGGAAAACAAATATGTCGCACTTCTCTTTCTCGAAGCTGAAAAATCGGTGAAATCGGTAAATTGTTGGTAGGCTACGGTTTTAATTGTGTTCTCACAGTGCTAAAATGTACATGAAACTAACGGAGTAATCAAGTCATGAAATCATACCGATATATAGGTATTGTAAAACGCCTGTAGTCCGTTTCCAGGCTTTATTTCAGCCCTGCTGAAGCTACTATTCATGTAGATTATTCATGTGTGCATGCATATTGTTGTGGCGAATCTTCAAATATTTGGAATTTGAGTGTTGCTGCAGCAGTAACCTCAAAACGAAAATCCGCGCAAACAGACGTACAAAAATGAAACTATGGCGTGAAACAATGAGTTCCAAGGAGAATCCTCCAAAGAAAAAAGGATGCGACAAAGGCATCGTGGAGAGGTTTAAAATGAGACTTGACCTCATATTTGACTACAATGGCTTAGTTAATCAAGGAGCAACCTGTTATTTGAACAGTGTGCTGCAGGTCCTCTTCATGACTAAGGACTTCAGAGAGGCTGTGGAAAGTCACTGTGGTCAAGATCAGAAGACTGCTGATTTTCACCTGAAAAGCCTTTTTAAGGCATTGAAGACAAGTGAAACTCACACAAAGGACATCTTATCCATACTTGGCATTGGAAATGTTTACGAGCAACGGGATGCTGCTGAATATTTTGAGAATATTTTAAGCATGGTCAATCCTTATGTGTCTCAGATCTTCAAAGGACATTTGAGACACACAATGAGATGTTCAGAAGGTCATGTGACCAGTGATGAACCTGGTCCATTCTGGACTCTACCACTCTCAATAGAAAATCCATCCGACTCTAACAAAACCTACAGTGTGaggGATGGTTTTGAGAAGTTTTTCAAGTCTTCAACTGTCAGTGAGATGTATTGCGACCAATGCAATGAGAAATCCTATTCAACCATTGCTTGTAAAATGGAACATCACCCAAAGATTCTGACTCTGCTCCTCAAGAGGTTTGAGTTTGACTACCACAGTATGTCATATACCAAAAATGACTGCTGTGTTGAAGTTCCTCACACGTTACGGACAAAGAACTGTGACTATGAACTCTATGCAGTGGTGGACCATGTGGGAAGTCTAAGAGGTGGACATTACACTGCTAGAATCAAGTCCTATGATGATCACAACTGGTATGTGTTCGATGACAGCTACGTCACACAGCCCAATCCACAATCAATCAGTCATATGAATAATGAAAGATCCCAGAGTGTGTATCTGCTTATGTACAAGAAATTTTCCTGGCTCTGCGGACCCCTGGGAGATTGACCACAGCTCTATAAGTCTGCATTTCAATTGGACTGGTGTGTATTATATGCCTATAGGGAACGCACTATTCCCTTTAAAATGGACAGCTCCTGAGGACATCACCAGTAGAAAGTTCACCATCAAGGATGACGTGTGGTTCTTCGGCACCTTGCTGTATGAGATCGTGACCTATGGGGAGATGCCCTGTCCCAGTAAGATTTGTATAATTAGGATATATTAATCTCCTTGGCATTAAAGCTCATTGAGGGAAAAATTGGACAAGATGGTGCTGACTGAGAGGGGCGGAATCAAATGATCTTTACTTCTATTGTACCGAAAAGTTCATACTATTATCCCATTTGACCCCAAGCACTTCGGATATCAGATAGACAGTTACTAACCACGATTTTGACCTCAAATAAGACTTCAACTCAGCTGTTGCCCGGTCCCTATTCCTTTGTTCGATTAGCTACCAAAACCCTGCAGGCATAGACACAGTAGACGAGCTGCAGCCCTGGTGAAAATGAGCGATGAGAAAACCGAACGGCGCTCCCCTCCTTTCTGTTGGCAAATGTCCAGTCACTTTAGAATAAGATGAGCTTCGTTTGAGAGTCACATGTCTTACAGATACGTGGATAGATGATGACACTATACACATAGTAATTTGTGGATTCTTCATCCAGTGGCAAGATCGGACGAAGGCTTTGGGCAAGTCTAAATGAGGAGGGGGGGTTTCATAAATAACAACAGGTGTGCTGCTTCCAGTGTGAAGGAAATCTATAACTTTTGCTcacctgatatagaatacctcatggtaagtTAAGCTGCAGACTCTTtcatctaccaagagagttatcCGTAATTATCACGGCTGTCTACAAGACAACAAAACTCTGGCACTCAACAAACTGTATggggccataaacaaacaagaaactgCTCACCCAGTGGCAGTGTTTCTGGCGGGCGGAGACTAACGTGAGGAGATTAAAACCGTCCTCCCTCACTTCTACCAACACATCACCTGCTCCACTAGGGGACCTACAACTCTAGACCACTTTTATTCTACCCACAGAAACTCATACAACGCCCTCCCTTGTCCTCCCTTCTGCAattctgaccacaactccattctcctgcttcctgtttacaaaacaaagctcaaacaggaagtaccagtgatgcgtTCAATACGGAAGTGTTGGGATGACACGAGgttacaagactgttttgctagtacagactggaatatgttacaGGATTCAtccgatagcattgaggagtttaccacaacaGTCGCAGGGTTCATCAATAAGGGCACAGAcaatgtcatccccacagtgactatatGAACGTAGCCAAACCAAAAACCATTGATTACAGGCAATATTCGTTCTGGGCTAAAGGCAAGAGCTACCGCTTGCTTACAAGGAATGGGACATGGACATGTACGCATGCAAGAAAGCCTGCTACGACTTCCGACTAGAAATCAAACATGCAAAAGGATAGTATAGTaggaaggtggaatcctattacaCCGGCTTCGATGCTCGTCGTATGTGGTAGGGTCTGCAGACGataatggattacaaagggaaacccagccgtgagtaACCCAGTAATGCAGAACTCCCAATCCAGCTGAAAGCCTTTTATTCTCACTTCGAGGAATACAACACTGTGTCTAGCATGAAAGACCCTGTTTTTCTGGAGGActgtgtgatctctctctctgtggccgatgtgagcaaaacgtttaaacaggttaacaatcACACAGACGGAATACCAGGGCGCGTTCTCAAAGCATGAGCAGACCAGAGCTCCAAGGtagcctgcctaaatgactttcgccctgtagcactcacatctgtaggtgctttgaaaggctggtcatgacacacatcaacataATCATCCCAGACACTATGGGCCCACTTCAATTCTCATaatgccccaacagatccacagatgacgcaatctcaattgcactttaCACTGCCCTCTCtcacctggacaagaggggaaataactatgtgagagtgctgttcatagactacagctcagcattcaacaccatagtcccctccaagctcatcaccaagctagagATCTTGGAAttgaacaccttcctctgcaactggatcttggacttcctgacgggccggccccaggtggtgagggtaggcaacaacatctcgccacgctgaccctcagcacggggcccctcaggggtgtgtgcttagtcccctcctgtactccctgatagagcttcaagttccttgacgtccacatcactaaggacttagcATGgcccacacacaccagcacagtcgtgaagagggcacagcagcacctattcctcctcaggaggctAAAACGATTTGGCATGGACCCTCAGATCGTCAGaaatttctacagctgcaccatcgagagcaacttgactggctgcatcaccgatTGGTATGGGAAATGCAACGCAAAGCACTACAGAAAGTGGTATATCTCAGTACATccctggggctgagctccctgccatccaggacctctatattaggcggtgtcagaggaaggcccgaaagACTTCTAAATAgtcaagactccagccacccaagccatagaatGTTCACTCTGCTACTGTCTGGCAAATGGTACGGAAGCATTggctctcggaccaacaggctctgAGACATTTTTTACCCCaatgccataagactgctaaatagccagaaGTGAAATAGTCAATTAATGGTTACCCAAACTATCTATCCTGATTCCTATCTTGCACTGACCctacgcacactcactagactatatatacacactatatacacactcactcacacaaaaaCTACATTGATACTcccacacaaaacccacacacttacgtggatgtcgattaaggcaaccccccccgcacctctctggttAAATGCaggagacacatttcagttgaaggcattcagttgtacaactgactaggtatccccgttTCCCTTTCATACGCCAGAGGAGGACGGGCTCACTGTAATGGCTGGattggaataaatggaatggagtcaaacgtggtttccttATGTTTgatgtttgatactgttccatttattccattcctgCCTTTAcaacgagcccgtcctcctatagctccccccaccagcctccactgacatacgcacacacatatacatagcACACGCataccaacacaacacaaacatttGCGGCTACTATTCTTTATTTTAcacttattatctatcctgattcctagtcactttaccctgcattcatgtacatactgtatctacctcaaacacctcgtacctctgcacattgatctgatactggtactccctgtatatacagtagcttcattcttgtgtattatattttattcctcttgtgttactattttttctGTGTATTATCATTTTtaaactctgcatcgttgggaaggcctcgtaagcaagcatttcatggtaaagtctacaccagttgtatttggcgcatgtgacaaatacaatttgatttgacactaACTTCTGACATCTACCACATTGTTATTGAGTGAGCAATGCTATCAATGCATGATTAGCACAAATGTAGAGTTCTTCTGCTTTCCAGTGCCATTTTGAGAGTATATATTGGACTGCTGGAAGGAGAATAAAAATGACAGGAGCACTTTCGAGGCTCTGAAAATGAGGCTGAGGAACGTTACCGGTTGAAGGTTTATGTAATAATTCTTTAGTATCGATTAAATAGCAGTAATTAAATGTTAGTCTTGTTTCTCAGCTCTGTCATCTCTTTTTGAGAGTCTGGAATGTTCCTTAGTGTTGTGTGTTACTGAAGACTATCTTAAAGTGCTACCATGACCACATTGCTGATTTTACTGACTGCGCTGTGAAGGGATAAAAGTTGATGTCATCTCTGCTGTCTTCAGACATGGAGTGTGCTTCCAAATTAAACCTTTTCTTTCTGCCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1993024 lncRNA upstream 102470 43202422 ~ 43202626 (+) True G1740301
TU1993022 lncRNA upstream 104807 43199907 ~ 43200289 (+) True G1740299
TU1992989 lncRNA upstream 133507 43171376 ~ 43171589 (+) True G1740276
TU1992987 lncRNA upstream 135556 43169263 ~ 43169540 (+) True G1740274
TU1992904 lncRNA upstream 143404 43158860 ~ 43161692 (+) True LOC110500494
TU1993068 lncRNA downstream 4521 43328395 ~ 43328602 (+) True G1740335
TU1993069 lncRNA downstream 5029 43328903 ~ 43329165 (+) True G1740336
TU1993070 lncRNA downstream 6196 43330070 ~ 43330342 (+) True G1740337
TU1993072 lncRNA downstream 8256 43332130 ~ 43332567 (+) True G1740339
TU1993073 lncRNA downstream 9602 43333476 ~ 43333693 (+) True G1740340
XM_021577896.2 mRNA upstream 5791 43287190 ~ 43299305 (+) True LOC110500501
XM_021577894.2 mRNA upstream 26930 43268610 ~ 43278166 (+) False LOC110500500
XM_021577895.2 mRNA upstream 26930 43268610 ~ 43278166 (+) True LOC110500500
XR_002470116.2 mRNA upstream 36954 43267057 ~ 43268142 (+) False LOC110500499
XM_021577892.2 mRNA upstream 59989 43234646 ~ 43245107 (+) True LOC110500497
XR_005038608.1 mRNA downstream 11806 43335680 ~ 43345477 (+) False LOC110500504
XM_036957911.1 mRNA downstream 11806 43335680 ~ 43345779 (+) False LOC110500504
XM_036957912.1 mRNA downstream 11808 43335682 ~ 43345779 (+) True LOC110500504
XM_036957910.1 mRNA downstream 22540 43346414 ~ 43354437 (+) True oxa1l
XM_021577912.2 mRNA downstream 59007 43382881 ~ 43385078 (+) True LOC110500510
TU1993035 other upstream 36953 43267214 ~ 43268143 (+) False LOC110500499
TU1993034 other upstream 36953 43267331 ~ 43268143 (+) True LOC110500499
TU1992021 other upstream 802739 42501349 ~ 42502357 (+) True G1739440
TU1991912 other upstream 949769 42354577 ~ 42355327 (+) True si:dkey-185m8.2
TU1991899 other upstream 1016596 42285056 ~ 42288500 (+) True cxcl8c
TU1993101 other downstream 65315 43389189 ~ 43390299 (+) True G1740366
TU1993150 other downstream 123176 43447050 ~ 43451167 (+) False G1740398
TU1993149 other downstream 126548 43450422 ~ 43451167 (+) True G1740398
TU1993165 other downstream 145944 43469818 ~ 43470325 (+) True G1740412
TU1993210 other downstream 200862 43524736 ~ 43526726 (+) True G1740453

Expression Profile