RNA id: TCONS_00050677


Basic Information

Item Value
RNA id TCONS_00050677
length 1665
RNA type mRNA
GC content 0.54
exon number 7
gene id XLOC_025801
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 56905103 ~ 56918442 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCGACAAAGGCAGATCTAGAAGCTATGGAGAACCAGATATCCACCATCCAAATCAGCTCCCATGGAGAGACGCCTAACCGGGGGTTCAAGCCTGTGGAGAAGGGCCGCAATTGGGGATGGCTCCTGTCTGGGTTCATCTCCTTAAACGCTCTGCTTTTGGGAATCGCCATCGTGAGTGGAAGTGTCTTCAACAAGGTCCAGATCACTTCCTCTCACCTTTTGATCTTCCTCATCTTGCTGGTCATCCTGTCCACTGTGTGGATGCTTTACTATAAAGTGCACACTTCCCGGGTGTACCGCGCAGTGCTCTACAAGGACAGTCATGCCGGACCTGTTTGGCTGAGAACTGGACTGGTTTTGTTTGGGATCTGCAGTGTAATCATGGACATCTTCAAGATTATTTTTTACGTGGGTCGAATGAACTGCGAATCGCCTGTCAAAATAGCCTTCCCCGTTGTGCAAGCGGTGTTTGTCATCGTCCAGACATACGTGCTCTGGATTCATGCTAAAGACTGTGTGCAAATCAAGCAAAACATCACACGTTGCGGCCTGATGTTGACTCTGTCCACCAACCTCATGGTGTGGATGATGGCTGTGACTGAGGAGTCGCTCCACCAGACTGTGGCTCCAGTCAAACCTCCGACCAACAACAACAtaggtagtgctgtcgcctcacagcaaggaggtcCCAGTGAATGTGAGTGTCTCCATAACATGTGCGACCTCTTTGAGAAGGCCTACTACTACCTGTACCCCTTCAACATCGAGTACAGCCTCTTCGCCTCCGCCATGACCTACGTGATGTGGAAGAACGTCGGCCGCAAGATGGACGACCACCACAGCCACAAGCTGCACTTCAGCCTGTGGGACGTCCTGGTGGGTCCGCTGGCGGGCCTGATCGTCCTGGTGGCGGGTCTGGCTACGTTTGTGGTGTACGAAGTGGACGTGTCTAAAGACGACCCTAAGAAGAAGGAGGAGGCTCTGATAATGCACTACATCATGAACATAGTGGCCGTCCTGCTCATGTCCAGCTCCGCTCTCGCCGGATGCATCCTCTTCCGCATGGACAAGCGAGAGCAGGTGTCGGGGAAGAACCCAACGCGGAGTCTGGATGTGGGACTCCTGGTGGGAGCGTCATTGGGACAGTTCCTCATCTGCTACTTCACTATAGTCGCTGTTTTGGCGTCTGGCGTCCAAGGCCACACGAATGGGCTCAACCTAGCATGTGCTATGCTAACGGTGATCGAGCTGTGCATTCAGAATGCCTTCCTCATCAAGGGCCTCCATCGGGAGCCCTTTAAGGAGACTGAGGTGGCCACCGTCTTCGCCAACGTCATGGCTGTGAAGGAGCGAGACCCAGAGAGACGGAGCAGCTCCATCGTGCCCGCACACACACTCCCCATCCCGCTGACTCTACTGCAGGGCCGGATGTCCTGGAAGAGGAGGGTCCTGAAGGAGATCTGCGcctttctgttgctctgcaatgtCACGCTCTGGATAATTCCAGCCTTCGGAGCGCGGCCTCAGTTCGACAACACCGTTGGGCCAGACGTTTATGAGTTCCAAACGTGGGCCGCCGTGGTAAACATCGGAATGCCATTTGGGATCTTCTACCGAATGCACTCGGTGGCGAGTCTGTTTGAGGTGTGCCTCGCTGCCTAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050104-2 Predicted to enable proton channel activity. Predicted to be involved in proton transmembrane transport. Predicted to act upstream of or within ion transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Orthologous to human OTOP2 (otopetrin 2).

Ensembl:

ensembl_id ENSDART00000124728

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052809 lncRNA upstream 82900 56821699 ~ 56822203 (+) True XLOC_025799
TCONS_00050673 lncRNA upstream 282231 56619195 ~ 56622872 (+) True XLOC_025796
TCONS_00050672 lncRNA upstream 324074 56574659 ~ 56581029 (+) True XLOC_025795
TCONS_00052385 lncRNA upstream 544453 56358682 ~ 56360650 (+) True XLOC_025793
TCONS_00050665 lncRNA upstream 797194 56099256 ~ 56107909 (+) True XLOC_025791
TCONS_00052810 lncRNA downstream 34246 56949955 ~ 56957558 (+) True XLOC_025802
TCONS_00052811 lncRNA downstream 510451 57426160 ~ 57480996 (+) True XLOC_025806
TCONS_00052812 lncRNA downstream 518552 57434261 ~ 57436304 (+) False XLOC_025807
TCONS_00052813 lncRNA downstream 519673 57435382 ~ 57436304 (+) True XLOC_025807
TCONS_00052814 lncRNA downstream 720665 57636374 ~ 57641090 (+) False XLOC_025808
TCONS_00050676 mRNA upstream 27185 56876280 ~ 56877918 (+) True XLOC_025800
TCONS_00050675 mRNA upstream 91180 56699187 ~ 56813923 (+) True XLOC_025798
TCONS_00050674 mRNA upstream 219157 56645710 ~ 56685946 (+) True XLOC_025797
TCONS_00050671 mRNA upstream 310818 56574623 ~ 56594285 (+) False XLOC_025795
TCONS_00050669 mRNA upstream 511085 56366395 ~ 56394018 (+) False XLOC_025794
TCONS_00050679 mRNA downstream 122324 57038033 ~ 57174041 (+) True XLOC_025803
TCONS_00050680 mRNA downstream 318384 57234093 ~ 57257075 (+) True XLOC_025804
TCONS_00050681 mRNA downstream 352654 57268363 ~ 57323496 (+) True XLOC_025805
TCONS_00050683 mRNA downstream 863964 57779673 ~ 57816570 (+) False XLOC_025810
TCONS_00050684 mRNA downstream 873052 57788761 ~ 57795677 (+) False XLOC_025810
TCONS_00050664 other upstream 1421456 55483513 ~ 55483647 (+) True XLOC_025789
TCONS_00050662 other upstream 1605945 55299043 ~ 55299158 (+) True XLOC_025787
TCONS_00050635 other upstream 2837464 54067523 ~ 54067639 (+) True XLOC_025764
TCONS_00050620 other upstream 4076097 52828912 ~ 52829006 (+) True XLOC_025751
TCONS_00050613 other upstream 4284928 52620058 ~ 52620175 (+) True XLOC_025746
TCONS_00050682 other downstream 720665 57636374 ~ 57639448 (+) False XLOC_025808
TCONS_00050688 other downstream 910230 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050692 other downstream 1082281 57997990 ~ 57998559 (+) False XLOC_025817
TCONS_00050699 other downstream 1252814 58168523 ~ 58170414 (+) False XLOC_025821
TCONS_00050717 other downstream 1786611 58702320 ~ 58710755 (+) True XLOC_025845

Expression Profile

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