RNA id: XM_021577920.2


Basic Information

Item Value
RNA id XM_021577920.2
length 5353
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC110500517
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 44039952 ~ 44050765 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCATTCCTTGTGTGGACAAAAGAAAGACACACTGACTGAACCAAAGATAATTTACATACGGCATAGGCTACCCAACCTGATCCACTGAAAAAATGTCTAAACTACAGTTGTTGCGTTTATTTTTAAATGAGCGTTTAACGGAGTCTGCTGCTGTGGAGATTTTCGAAGCAGTTGAGAAAGCGGTAGCGGAGTACCAGGAGGAGAATGATCGGCTACGGAGACTGCTGCGGTTCACACCAGAGATACAACTATGTAGAATAGacTCCCTGCAGTTTTCTCTTGCTGTCTCTGAAGAGAAGGTTCCCCCTGAACAGCAGCACTGTGAGCAGGAGTGGAGCTCCAGTCTGGGGCAGGAGGACCCAGAGCCCACACAGAtcaaagaggaacaggaggaactcCGGATCAGTCAAGAGGAAGAGCGGTTTCAAGGGTTGGAGGCTGACATCACAGAGTTCAAATTCCCTCCTACCTGTGTGAAAAATGAATGTGATCAGGAGGACCCACTTCAGTCCGTGACTGAACAGACtatggagaacagagagagtgactCTAAACCAGTTGATCTCAAACCTTTTGGGACTGTGACCCACCTGAAGGGTCTCGACATTCCCTTTGACCCTCCAGATAATCAAAACAATGCCTCCAGTCACAGCTCTGCTACAAGCAGCGACCAAGTAGGACTTAACAGCAGCCCCCCATTGGATCTAATTGTGCACAAACTggctcacacaggggagaaactgtttagctgtggtgactgtgggaaaagcttcagtCAAAAGGAACACCTAGGGAACCATGTACgcattcacacaggggagaaaccgttTAGCTGTGGTGACTGCGGGAAAAGCTTCACTGTCAAGGGGAACCTAACTGTGCACAAACTGGCTCACACTGGAAAGAAACCATTTAGTTGTGGTGACTGCGGGAAAAGCTTCTATCAGAGCCAGGAACTAACTGCGCATATACGGACTCACACTGGGGAGAAACCGtttagctgtggtgactgtgggaaaagGTTTTATCACAAGATTACTCTAAACCGACACATTCAGACTCACTCAGGAGAGAAACCGTTTatctgtggtgactgtgggaaaagGTTTTATCACAAGATTACTCtaaacagacacattcagactcacacaggagagaaaccatttatATGTGGcgactgtgggaaaagcttcagtCAGAAGGAACACCTAGGGAACCATAcactgactcacacaggagagaaaccgtttAGCTGTGgagactgtgggaaaagcttcaggCAGAAAGGGACCTTAAATACGCATAAACTGACTCACACGGGAGTGAAATCATTTAGCTGTGGAgactgtgggaagagcttcattCTGAAGGGGTCCCTAAAGATGCATATACAGACTCACACAGGTGTGAAACCATTTATATGTGGAGACTGCGGGAAAGGCTTCTATCTGAAGGGAGACCTAGGTAAGCATATACTGACTCACACAGGtgagaaaccatttagctgtggaGACTGCGGGAAAAGCTTCAGGCAGAAGTCGGCCCTAAAGAcgcacacactgactcacactggagagaagccattTCACTGTGGAGACTGTGGGAAAAGATTCAGTCAGAATGGGGCCCTAAAGAAGCATTTATTGACTCACACAGGAGTGAAATCATTGTAGCTGTGGGGACTGTGGAAAAAGCTTCTATCAGAAAAGACGCCTAACTGAACATATCCAGACTCACCCAGGAGTTAAACAACATGACTGCTCAGTCTGTGACAGAACATGTGTTACGGCTCATCTGCTGAAGCATGTTAATAATGTCCTCAAAGAAAGAAACTGGGAGGACAAATACAGCTGCAAGCAGCCATGAAGGCTCCTGGCCACAATATTTCTTGAATTTTAATTAGAGCATTCTGTTAGTGAACCTTTTGAGTAAGATACTTTGCCACTTGGTTTTGATACTGCCTGGAGAAGGAGTGGCAATGCCGCAAAAATCAAGGCTTTTTAACCAATAactccaccccctcccccctAATGTAAATTTAGTTACTGAAACGTACTCGCAGTTGAGAAGATTTGTTAACAGTTTGACGTTCACAACTGAATTGCATTCTGTTTTTGGAGATACTGACACGTGCTTCGTAGTAGACCTTCCTTGTGGTGTCCTTAAGCCCctcgaggcaagtcagttaagaacaaattcttatttacaatgatggcctacaatgatggccaaaccctcccttaacctggACAACtcggggccaattgtgcgccgccctatgggactcaatCAGTACTAAGTTGTTGGATGGATCAAAGAGAAGTTGAGTAGTTTGGGTTAAGCTGGGTTTGGTGTGGACATGTCGTTTTGTTTTTACAAAATTGACACTATCTCCATCTTTTGATTAAATTCTTAGCTTTTCACATAGGAGTTCTTAACTTCTGTTTTGAGTTAATCGGACGTGGTTCATAGGAAGATTGTTAAAGATTTGTATGGTTCAAACTTCCAAAATGAATGAAAATCCAATATGGCAGAGGTCATAGCTCCTTGGGAGAGTCTCCTTTGGAAAAAAGTCTGTCCTcgactcctgtcctcctctccgtGAACCGGAAACTGATACGTCATTTGTTAGTAGCCGGACGGAGAGAAGTGTCATCCAAAACCCATTAGATAAGAAAGCCAGAGTTCCCGCTCCAAttaccttctcctccaatgggttttgagaaggagacaaggAGTATGCCATTTGAGATCTTCCCATAAGTACCCTTTCAGCAGCTAGCGCGGCATTCTTTCAGAATATGCCACACCCCCTTTGAATGGTCTGTTTTCTCAAAGGAGAAAAACATGCACCCGTTTTAAAACGATACACTACTTATCCTTTAGCGCGAGTGGAGAAGGGTAGTCTCATTTCATATGAGCGCATTTCGGTGAATCCCAAACCAGCCCCTTGCCGCTACCTACTCGTCCTCCGTTGTCACGTGTTGCTGACGAAACTAACGAGGATGACTTCCATCGAGTGGCAAGGGGATCAATAAACCCTTCGACTTCGGGACACACTAGTGACTTGAATGATGCGATTCATGTTCCATATTTTAATAATAAAATGCACATGAAATTCAAATGAACAATTGACTAGCAATACTCTTAACAGTTAAACTTATCATTTGGGAGGTATTTCATATGTTTTGAGTCAAGCAATGAAatccaacacaaacaaacacacatttccTATAATTAGGCAAACTCCAAACATATCTTAGTGCGTGTTGGGGATAGCACTTCACTCTGGAGCCTGCTTGGTTCGAAATGGCAATCAGAGGCGCTAATTAACTGCTACATCCAGGGCAAAATGGTTTACCCTCTTGATGGTGGAGAGAAATGTACGTTTTAAAGTGTTCCATTTCATACGTTTGTCTGAGCAAAAGGAATGACAATTTATGGTAAGAATAGGGAAAAGCAGAAATAACATTCATAGTCATACCCATCAAATGCATTTTATTTAATCACTTTTGGTTCtcttcaaacaaacaaaaacctaACTATTTACAATTCTTTAGGTTCTTTTTCTGAATGCATTTATGTTACTAAACTCATTCAAAAAGTTTAAGTGATGGAATTGAGCTGACTGGGTGAAAAAAGGGAAAATATCATTTGATAAATTGGTAAATTAATCATCTCCCCCAGGGGCATCACAATGCCAAAACATCAATCACTTTTGAACTTCAAGGATTAACAgaaaatctgaaaaatgtcaacaGCTGGAGACTTGACAGACTAACATATCATAACCACCAGTCATTCAACAGCAGACTAGAATAATTGATGGCTACATTTGAAACACAGCTCCCTGCAAACCAGCATGCCACTGGCATCCTTATCTGACCGATGGAATTTGAAATAATGACAAtaccctgctctctctgtcttcacaAAGTACTTCAGTGACATTTTAGATATTCCCCAATCTGCACTAACCAATACATCAACTGAACCAAATGGACTGAATAGTGTATTCAAAACCGACCCAGCTAAAACGTAActttctgagaaccatatgtttatTAGTTTGGTGAGAGTCTGGTTGTGTTGATTTTGCATATGACCTttccacaactttctgggaatgttgcaggatagttgcttggctttggaacattctcagcacttTTAAGTaacttgaagaaaaaaaaatgtaattacttttaacagaatgtttcctaaaagttcaaacgtGGTTACATTTAAGTTCAGTTTTGGTAATGTTTTAAGAacattctccaactggtttgacattgggaatgttctcatagttcagagaacgttaaacaacattcttctgtgggaatttcagtacttcagcataacgtttcctcatggttctatttaaagttcTCATTGTTTAAAACTTCCTATAAAAACTTTAATGTTCAGAGAACGTTATTTCAAAACatacattctgttctcagcaTCACCAAAACACTCTTGTTAAGTGTGTTTGGGTGTGGTGGCCgcacccactaattggccacacctgtgCTTGAGGAGTGCTGTTTCCTTTAAAAATgtggtctgtttgaatagactcaAAGGAACAGATTTGTATGTGTAAAACAAACAATGGCACACTAGCTCCATCCTGATGGCACCGTAGACTAATTCCAGAAGATTATAGGTTCGAATCTCACAGATGCCAtgtcacaatttttttttatgtttgcatGAATTTCCATGTGTCTGATCTGTGCTTGGAGTTTAAACAGTTAACCCCAAATAAGCTAGCGGTGTTCTTGAAACGTTCAGTTTCTTATTGAAACTTTCAGTGAAAGTTAAggaagttatttaaaaaaaacttcaaGTACATAGAATTTCCGTTCTCAGTGTTTAATAAAACCTCAGAAGGGAACTTcaaaggaaccagagtaaaacgttgtaagaacctccctgcaacctataaataaacattcccagaacaggcaaagTTTTCACTGCTGTTCTCAGAACGTACACAGAacgtacattttttttcttctgttttaCCAGTTAGGAAAGGTATGGCTTCTTCCCACAACCAATGGGAAACAAAAAAACAcgacgttcccacaacttccaaggaaccaaatgtgctagctgggtagaaAGCCAAAGCTAACATATATGGAAAAACCTGAACCACAGCCATATCCTACAACGGAAGTTAATACTTGTTTGTCGGACCAACCAGAACTGATTCTAAATAGGAAAACACGTTCAAAAGAATGAATCCATTCAACCTAACTGACAGGGGAAGTATTGGGTTTCTCCATACGAAAAACAAACTAACGAGTTTCAGAACTGTTCCAAGCACCTTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1993422 lncRNA upstream 122489 43917239 ~ 43917463 (+) True G1740649
TU1993420 lncRNA upstream 123673 43916008 ~ 43916279 (+) True G1740647
TU1993273 lncRNA upstream 402238 43637307 ~ 43637714 (+) True G1740507
TU1993216 lncRNA upstream 504999 43533843 ~ 43534953 (+) True G1740457
TU1993209 lncRNA upstream 513226 43524736 ~ 43526726 (+) False G1740453
TU1993528 lncRNA downstream 110242 44159830 ~ 44160067 (+) True G1740731
TU1993532 lncRNA downstream 121243 44170831 ~ 44171265 (+) True G1740735
TU1993533 lncRNA downstream 123421 44173009 ~ 44173251 (+) True G1740736
TU1993535 lncRNA downstream 125604 44175192 ~ 44177709 (+) False G1740738
TU1993536 lncRNA downstream 125604 44175192 ~ 44179638 (+) False G1740738
XR_005038610.1 mRNA upstream 20051 44012853 ~ 44019901 (+) True LOC118942933
LOC110500847 mRNA upstream 630910 43405498 ~ 43409042 (+) True LOC110500847
XR_005038440.1 mRNA upstream 635205 43397554 ~ 43404747 (+) False LOC118942788
XM_021577912.2 mRNA upstream 654874 43382881 ~ 43385078 (+) True LOC110500510
XM_036957910.1 mRNA upstream 685515 43346414 ~ 43354437 (+) True oxa1l
XM_021577921.2 mRNA downstream 48349 44097937 ~ 44099926 (+) False pop7
XM_036957935.1 mRNA downstream 48516 44098104 ~ 44099926 (+) True pop7
XM_021577926.2 mRNA downstream 76494 44126082 ~ 44154069 (+) False LOC110500520
XM_021577931.2 mRNA downstream 77086 44126674 ~ 44128053 (+) True ufsp1
XM_021577925.2 mRNA downstream 99468 44149056 ~ 44154069 (+) True LOC110500520
TU1993210 other upstream 513226 43524736 ~ 43526726 (+) True G1740453
TU1993165 other upstream 569627 43469818 ~ 43470325 (+) True G1740412
TU1993150 other upstream 588785 43447050 ~ 43451167 (+) False G1740398
TU1993149 other upstream 588785 43450422 ~ 43451167 (+) True G1740398
TU1993101 other upstream 649653 43389189 ~ 43390299 (+) True G1740366
TU1993553 other downstream 163198 44212786 ~ 44213230 (+) True G1740752
TU1994546 other downstream 396972 44446560 ~ 44451532 (+) True LOC110500528
TU1994553 other downstream 411794 44461382 ~ 44472564 (+) False LOC110500529
TU1995329 other downstream 1394939 45444527 ~ 45448687 (+) True fcer1g
TU1995333 other downstream 1435684 45485272 ~ 45493952 (+) True LOC110500870

Expression Profile