RNA id: TCONS_00052811


Basic Information

Item Value
RNA id TCONS_00052811
length 800
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id XLOC_025806
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 57426160 ~ 57480996 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAGATAGAGTTGCCTGGGAACAGGGCTGTGTTTATGACGAACTCCTTCAGGCTCAAtgtgaataaGCTGAGATCTGCTCAGACTGAGAAAGCAGGAAAAGCTGCAGCTCCCAAAGTGAAatgacacacagagagagaaagaacgaTGTTTCGAACATCACAGCAAACAAACTCTTCAGTACAGTCACAAAATCATCAACCCCGCAGCACCCGCCACCACATAGAGACCGCCATTCGCTGATTCCATGAAGACGACGAGCGGTCAGACGAACAAGATGGAGGAACATGTAAAATAAACTAGAGTAAAACTCATGAAAAGAcgaaccaaaaaaaataaaaaatgagcctACAGCGGCTGATCACAGAAACGGGACAGAAAGCAAGGCTGATCACCAGAAGCACCTGAGAGCGAGAGAGGAGCGATTTGTGTACATACCTCCTGAGGAAAGACAACAGCCAAAATCAtgggaacaaacaaacaaacaaacgaagaaGAAAAGGGGAAacaaaaaattgaattaaatgagAAATCATCCTCCCCACACGCTGCCTCTCTGACAGAGCAAGTACATATTGGGGTGAAGCTGGTTTTATAGTCGCACTTTCAGACTTTCGCCTTCTTGATGTCATTTCAGAAAAGTGGTCTTTGCTAGCGGAAATTGTATGAGGAGGCAATCACTATTAAAGCACAGCATcgtttacagtcaattaaataggtCTAATGTTGTTTTGAGGTCATACTTGCATGggatttcagagtgaatattcaaaatagcatggtaaacaatatagggacagCG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052810 lncRNA upstream 468602 56949955 ~ 56957558 (+) True XLOC_025802
TCONS_00052809 lncRNA upstream 603957 56821699 ~ 56822203 (+) True XLOC_025799
TCONS_00050673 lncRNA upstream 803288 56619195 ~ 56622872 (+) True XLOC_025796
TCONS_00050672 lncRNA upstream 845131 56574659 ~ 56581029 (+) True XLOC_025795
TCONS_00052385 lncRNA upstream 1065510 56358682 ~ 56360650 (+) True XLOC_025793
TCONS_00052814 lncRNA downstream 155378 57636374 ~ 57641090 (+) False XLOC_025808
TCONS_00052386 lncRNA downstream 155420 57636416 ~ 57640587 (+) True XLOC_025808
TCONS_00052387 lncRNA downstream 285628 57766624 ~ 57768666 (+) True XLOC_025809
TCONS_00052815 lncRNA downstream 500262 57981258 ~ 57986847 (+) True XLOC_025814
TCONS_00052816 lncRNA downstream 513382 57994378 ~ 57995547 (+) True XLOC_025816
TCONS_00050681 mRNA upstream 102664 57268363 ~ 57323496 (+) True XLOC_025805
TCONS_00050680 mRNA upstream 169085 57234093 ~ 57257075 (+) True XLOC_025804
TCONS_00050679 mRNA upstream 252119 57038033 ~ 57174041 (+) True XLOC_025803
TCONS_00050678 mRNA upstream 507718 56905103 ~ 56918442 (+) True XLOC_025801
TCONS_00050677 mRNA upstream 510451 56905103 ~ 56915709 (+) False XLOC_025801
TCONS_00050683 mRNA downstream 298677 57779673 ~ 57816570 (+) False XLOC_025810
TCONS_00050684 mRNA downstream 307765 57788761 ~ 57795677 (+) False XLOC_025810
TCONS_00050685 mRNA downstream 316256 57797252 ~ 57816877 (+) True XLOC_025810
TCONS_00050686 mRNA downstream 339917 57820913 ~ 57823547 (+) True XLOC_025811
TCONS_00050687 mRNA downstream 344942 57825938 ~ 57830023 (+) False XLOC_025812
TCONS_00050664 other upstream 1942513 55483513 ~ 55483647 (+) True XLOC_025789
TCONS_00050662 other upstream 2127002 55299043 ~ 55299158 (+) True XLOC_025787
TCONS_00050635 other upstream 3358521 54067523 ~ 54067639 (+) True XLOC_025764
TCONS_00050620 other upstream 4597154 52828912 ~ 52829006 (+) True XLOC_025751
TCONS_00050613 other upstream 4805985 52620058 ~ 52620175 (+) True XLOC_025746
TCONS_00050682 other downstream 155378 57636374 ~ 57639448 (+) False XLOC_025808
TCONS_00050688 other downstream 344943 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050692 other downstream 516994 57997990 ~ 57998559 (+) False XLOC_025817
TCONS_00050699 other downstream 687527 58168523 ~ 58170414 (+) False XLOC_025821
TCONS_00050717 other downstream 1221324 58702320 ~ 58710755 (+) True XLOC_025845