RNA id: XR_005038612.1


Basic Information

Item Value
RNA id XR_005038612.1
length 2421
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC110500530
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 44537944 ~ 44556711 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGCTGGCTCTGTAATGCACTGTGAGCAAAGGacgagaaagaaagagggagagagggagtcacacacacactctgtctcttgcacgcacacacacagaaactgaGAAGTGTCTTGCTTGGGAGATTGAGAGACACATGCacgcactctcactctctcacacatgcacacacacacacacacagggggagtGGTGAACGCAGGCTCCGGTGCGTTTTGAAGCAGCagtgagagtaagagagaggacTAGCCAGTACAGAGGACAGACGACTCTTAAGCTTGAACGGACCGTCACCTACCTACCAGCCCCCAGCCGATGAGCCACAGCCACTGCCACAGCACCgtgaTAAAAGGGGTTATGCCAGGAGAGCTTGAAAGGAAGGGAAGATCCAGCTCTCCGTCCGTccatctgtccgtccgtccgcctCTTCATCCTCAACCCCCTTTTTTTGGGAGCCGGTATCTCAGGTCGGACTGTCCCATTTTGAATTCTTCCTTTTCTCTTGTCATTCTCTTGTTTTGATGGCGGGATGTTAAAGATCAGGTGAAGAAAGGAGGAGCTACATTGTGGACGTCTGCCAGGTCATGTCGTttatacattttttgtttgttgtttattCAACGATCCCTCATTTGTCCTCCTCCTGACTGAattaaagagtgtgtgtgagacgcAGGACTGGAGCCTATGAGGACTTTGAGACTCATCTGTTTTGATATGATCCGGTCGTCAGGCAAATTCTTTCCTATCCTGACGGAGCTGTATCAAAGTTAGCTGGAGctcaagggagaggagggggccgTGGGGAGGGCCTGGGGCCCACAACAGAGCACCCGCATTGGGACACATGCAGAGAGGGACACTGGCATAGTGGTTCTTCTCACCCACTGTTTTCTGTGTACAGGAAAATGACAACAGTAGTTTTCTATTGTTCTGTTGCCATGTTGACGGAGGGACAGTGACATACCAGGGCAACACCTGAACAACAACAACGGTAACAGCAAGGACAGGCAACAGCCATATCTAaaagacaacaacaggtaaaccaCCAGTGACAGCAACAATGCACTGCATCTAACCAAACCTCAATCAGCCAACACCTGATAACTTTGGGTGGGCCTTTGACAAGGaccccacccctccatctctccatccccctctctccctgctgtggTGTCCTTCTCCCTTCATCCTCCAGCGAGAATCCCCTAGTGACCCCACTCTGCTACTATATTTATCCAGATATTGTTGACATTATATTGACATTTATATGTCAATCTAGGCAAGTTTGCTCAAAGGATTCTGGGTAATCACCCCGGGCGGTGCTCCATCGCCCTGGGTGAAAGGGCAGGGGGGCGGCCCACGGTTCCCCCCGACCACAACCGGGTGAAGAGCGGGCGCGGGCAGCAAAATGGCGGCTCTCGCCAGCTCGTTGATCCGCCAGCGGCGGGAAGTGAAGGACCCCCAGGCCAACCGGCAGGTGGCCAACAAGAGGAAGCCGTGCCCCAAGGCCAACAAGTCCCTGTGCCAGAAACAGATATTATTACTCATTTCAAAAGTCCGACTATGTGGCAATCGAGGCCGAAAATTAGAAAAAAGACCGGgactacaagctggcgagaTCTATTTTGAGTGGGGGACTGAAAGTGAATGAATGGTGCCACGGGCCTCACCTACACTGGACCTGAAATGTTTCTCACAACTTTGACAGCTTTGTCATTGAGATCAGGACAACAATATTAAGgacgcTGGTGGACTGTCAGCTCTCAGAACTTAGTGAAGAGGACGACACTGTAGACATGTCACCTGTGCACCAGGCAGTCAATGGAAGGTGTCTCCAAGGTGCCAAGGACAGACAGGGGCTAGAgagactggacaacatgctgctgaGTCTGCAGACAGGGCTGAGGGACAATCATACCCTCACAGCCCAGATAGAAACATAGGAAGGAGGATATGACGTGGTTTGTTTGTGTTGCGCCAGGATGCAAGGGCAAGCAGTAATGCATTGTGGAGGACCTACATTGTTTTAGGTTGTGGTACTCCATTGAGTGTGACTCATTGCAGACATAGGGACTAGTAAAGGGACACCTAGTCCTCACCCAGTAGCTTAGATTGTCACTAGTCATTTTGACTCCCTTGCATGCTTTTAATTTGTTCCCATTCTGACTCTTCATGTATTAGGCTATAAGCATAGTGGAATGCATTTGGCTATTGGCATTGTGtattaggctataggcctagtgtGTACAGAAAAAATAGATGTTTTAAAGCCAAATATTCTTATTATATGCCTTATTCTTATCATATTTTGTCATTCAAATTTTCTATGTAACTTGCACTTTGTTTTCAGGTTTGAGTGAGACGATGTATTCCCTGCAATAAAGTACTTTCAATAAAGTTCTTGAtttattaatatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1994573 lncRNA upstream 49186 44488530 ~ 44488758 (+) True G1741670
TU1994552 lncRNA upstream 57379 44478820 ~ 44480565 (+) True LOC110500529
TU1994569 lncRNA upstream 62315 44475403 ~ 44475629 (+) True G1741666
TU1994556 lncRNA upstream 79051 44458606 ~ 44458893 (+) True G1741653
TU1994490 lncRNA upstream 132516 44405226 ~ 44405428 (+) True G1741587
TU1994619 lncRNA downstream 117296 44674007 ~ 44675297 (+) False G1741712
TU1994620 lncRNA downstream 117296 44674007 ~ 44675297 (+) True G1741712
TU1994889 lncRNA downstream 162828 44719539 ~ 44719756 (+) True G1741965
TU1994917 lncRNA downstream 202768 44759479 ~ 44759698 (+) True G1741989
TU1994920 lncRNA downstream 206626 44763337 ~ 44763631 (+) True G1741992
XM_036957940.1 mRNA upstream 57379 44461338 ~ 44480565 (+) False LOC110500529
XM_021577936.2 mRNA upstream 57379 44461339 ~ 44480565 (+) False LOC110500529
XM_021577935.2 mRNA upstream 86412 44446186 ~ 44451532 (+) False LOC110500528
XM_021577926.2 mRNA upstream 383875 44126082 ~ 44154069 (+) False LOC110500520
XM_021577925.2 mRNA upstream 383875 44149056 ~ 44154069 (+) True LOC110500520
XM_036956514.1 mRNA downstream 44152 44600863 ~ 44667561 (+) True LOC110500854
XM_036957941.1 mRNA downstream 122954 44679665 ~ 44703721 (+) False chrnb1
XM_021577937.2 mRNA downstream 123074 44679785 ~ 44703720 (+) True chrnb1
XM_021577938.2 mRNA downstream 170489 44727200 ~ 44746630 (+) True LOC110500532
XM_021577939.2 mRNA downstream 225508 44782219 ~ 44788930 (+) True LOC110500535
TU1994553 other upstream 65380 44461382 ~ 44472564 (+) False LOC110500529
TU1994546 other upstream 86412 44446560 ~ 44451532 (+) True LOC110500528
TU1993553 other upstream 324714 44212786 ~ 44213230 (+) True G1740752
TU1993210 other upstream 1011218 43524736 ~ 43526726 (+) True G1740453
TU1993165 other upstream 1067619 43469818 ~ 43470325 (+) True G1740412
TU1995329 other downstream 887816 45444527 ~ 45448687 (+) True fcer1g
TU1995333 other downstream 928561 45485272 ~ 45493952 (+) True LOC110500870
TU1995371 other downstream 992406 45549117 ~ 45555589 (+) True si:dkey-38p12.3
TU1996084 other downstream 1082585 45639296 ~ 45639742 (+) True G1743043
TU1996124 other downstream 1150431 45707142 ~ 45709950 (+) True G1743077

Expression Profile