RNA id: XM_021577937.2


Basic Information

Item Value
RNA id XM_021577937.2
length 2302
RNA type mRNA
GC content 0.50
exon number 11
gene id chrnb1
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 44679665 ~ 44703721 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGTGGAGGTAATTTGAGCAGACAGCAGTTAACTCGAGCTGCCTGACTGACAGACAGCAACACTCTGGATTTACAAGGAGACCGAGGAACTACACCGCACAAACTGTATAATAACTGATATTTGTCGTGTAAAAGAGTATAAATACTCACTGTTTTGAAGGCCTGTCGGTTTGTGGGTCGACATGAGGGCCCTGGACTTGCTCCTGCTGTTATGTTGCTTGTCTGGCCTATACGCGGTGGGAGGTGCGTCGGAGGGGGAGAAGCAGCTGATGAAAGCCCTGTTCAACAACTACAACCTGAAGGTTCGCCCTACGGCCTCACCTGGCGCCAAGGTGGTGGTCCGGATTGGCATGATCCTCTCCTCCTTCGTCAGCCTGAACATGAAAGCAGAAGAGATGAGCACAATTGTTATCATGAACCTGGAGTGGACAGACCACCGTCTCTCCTGGAAACCTAAAGACAATGACGGGATCGAGGTGATGCGACTTCCTGCTGGGAAAGTCTGGCTGCCTGACATCGTTCTCATCAACAAtaatGATGGTGTGTTTGATGTGGCCCTCCATGTCGCTGTCCAGGCCTATAGTAGTGGGAGGGTGACCTGGTCTCCCCCTGCCCTCTTCTGTAGTTCCTGTGGGGTCAAgGTGACGTACTTCCCATTTGACTGGCAGAACTGCACCATGGTGTTCAAGTCTTACACCTACGACTCATCAGAGGTGGACCTGCAGCACGCTCTGGATGACCAGGGCAACGAGATCAAAGAGATCCAATACGACGGGGGCTTCAGTGAGAGTGGTGAATGGTACATCCGCCACCAGCCCAGCAGGAAGAATGAGATCCGTGAGGACCTGTATGAAGACATCACCTTCTACCTGATCATCGAGAGGAAGCCTCTCTACTATGTCTTCAACATCATCATCCCCTGTATCCTCCTCACCTGCATAGCCATCTTCAACTTCTACCTGCCGCCGGACGCTGgTGAGAAGATGGGTCTGTCCATCAACGTTCTGCTCACCCTGACTGTGTTCCTGCTGCTGCTGGCTGACAAGGTCCCCGAGACCTCCCTGGGTGTCCCCATCATTGTCAACTACCTCATGTTCACCATGATCCTGGTCACCGTCTCAGTCATCCTCAGTGTGGTGGTCCTCAACCTGCACCACCGGTCCCCCTCCACACACCACATGCCCATGTGGGTCCGCAAGaTCTTCATCCACATGCTGCCCCCCTACCTGGGCATGCTGCGGCCCAAGGTGGAGATGCCCCTCTCCCTGGACCAGCCCCCCAGGAGGGAGAAGAACAATATGGCTATCAGCCGCGCTGCTGACGAGTATTTCATACGCAAGCCCAACACCTGCTTCCTCTTCCCCAAACCCAATAGGTACCAGTCTGAGGGCATGTGTACTGACCTGAGGAAGTTCATTGACGGACCCAGCCACTACCTCACTCTGCCTCCGGAGCTCAAGACTGCCATCGAGGCCATCATCTACATCGCTGAGCAGCTACAGGCTGAGAAGGACTTTGCTGCTctGAAGGAGGACTGGCAGTATGTGGCCATGGTAGTGGATCGCATGTTCCTGTGGATCTTTGTGGTCTTCACTACTGTGGGAACCCTGGGCATCTTCGCCGACGCCAGCTTCAACCACACCCCCAGCGACCCCTTTAAGTACCCCTAACGTGGGACACACACTCCACgtatgcatgaacacacacacacacaagatcccGAACTTTACCTCACTGAAACCCCAGAAGCCATGACAGTTGCCCCAGCCTCCAAAACAGACATTCATAGCGAGATCCTCTACATGCCTTGGACATAGCTACTCTATACTGTACATGGAAGGGTTTCTTTTTCTATATCTGCTGTGCTGAAGTGTGACATTGCTGTAGTTCTGGGGCAGTAGGaatcaagcatctcagagtaggagtgctgatctaggatcagcccaCAGTCGATGGAATCTTATGTTCTAAAaggataaactgatcctagatcagcacttctattGTGAGATGCTTTCTGAATAGGGGCCCTGGttttacaaaaatatatttattgatTGCTATATGTTTGTTGGGAGGATAAAGACAGTGAAAACCAGATACTATAAAATACCAAGTGTATACATTTAATTTACCAGAGTGAGAATGTGTGTTTGGCATATATACTATATGTACCTCTGGTCATCTGTTGTGTATTTTAGTGTGTGTGAAGTTTATTCTTGTATTCAGGAGTAGAATAGCACATAcacatgtatatgtgtatatatgtatgtacagtggggcaaaaaagtatttagtcagc

Function

GO: NA

KEGG:

id description
K04812 CHRNB1; nicotinic acetylcholine receptor beta-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1994619 lncRNA upstream 4488 44674007 ~ 44675297 (+) False G1741712
TU1994620 lncRNA upstream 4488 44674007 ~ 44675297 (+) True G1741712
TU1994573 lncRNA upstream 191027 44488530 ~ 44488758 (+) True G1741670
TU1994552 lncRNA upstream 199220 44478820 ~ 44480565 (+) True LOC110500529
TU1994569 lncRNA upstream 204156 44475403 ~ 44475629 (+) True G1741666
TU1994889 lncRNA downstream 15819 44719539 ~ 44719756 (+) True G1741965
TU1994917 lncRNA downstream 55759 44759479 ~ 44759698 (+) True G1741989
TU1994920 lncRNA downstream 59617 44763337 ~ 44763631 (+) True G1741992
TU1994922 lncRNA downstream 61968 44765688 ~ 44765905 (+) True G1741994
TU1994929 lncRNA downstream 85950 44789670 ~ 44793859 (+) True LOC118942934
XM_036956514.1 mRNA upstream 12224 44600863 ~ 44667561 (+) True LOC110500854
XR_005038612.1 mRNA upstream 123074 44537944 ~ 44556711 (+) False LOC110500530
XR_005038613.1 mRNA upstream 123082 44554195 ~ 44556703 (+) True LOC110500530
XM_036957940.1 mRNA upstream 199220 44461338 ~ 44480565 (+) False LOC110500529
XM_021577938.2 mRNA downstream 23480 44727200 ~ 44746630 (+) True LOC110500532
XM_021577939.2 mRNA downstream 78499 44782219 ~ 44788930 (+) True LOC110500535
XR_005038614.1 mRNA downstream 86879 44790599 ~ 44796290 (+) False LOC118942934
XM_021577945.2 mRNA downstream 101078 44804798 ~ 44807754 (+) True LOC110500538
XM_036956495.1 mRNA downstream 157491 44861211 ~ 44862751 (+) True ponzr6
TU1994553 other upstream 207221 44461382 ~ 44472564 (+) False LOC110500529
TU1994546 other upstream 228253 44446560 ~ 44451532 (+) True LOC110500528
TU1993553 other upstream 466555 44212786 ~ 44213230 (+) True G1740752
TU1993210 other upstream 1153059 43524736 ~ 43526726 (+) True G1740453
TU1993165 other upstream 1209460 43469818 ~ 43470325 (+) True G1740412
TU1995329 other downstream 740807 45444527 ~ 45448687 (+) True fcer1g
TU1995333 other downstream 781552 45485272 ~ 45493952 (+) True LOC110500870
TU1995371 other downstream 845397 45549117 ~ 45555589 (+) True si:dkey-38p12.3
TU1996084 other downstream 935576 45639296 ~ 45639742 (+) True G1743043
TU1996124 other downstream 1003422 45707142 ~ 45709950 (+) True G1743077

Expression Profile