RNA id: TCONS_00052386


Basic Information

Item Value
RNA id TCONS_00052386
length 1404
lncRNA type intronic
GC content 0.44
exon number 4
gene id XLOC_025808
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 57636374 ~ 57641090 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAGTGCAAACCTTTGGCACCTGCTAACTCCCTGCTAACGAGGGTGATCCAAATCTGTGTGGACCAGCCCGGACAATTCAAAACTATAACTCAGCAATTGACCGCATCCAAGCAGAAGGAGCACAAGACGTGGAAGGAGTAAAATTCAGAATGGATGACGTAGAGCCAAGCAACATAAGCAGTGCCATTACTAATGTGTTACCAGACCTACCAACCTCAAATCTAAATATTGTATTGGAGACATTACAATCTTTAGGTGTGGGAGCCACTGaagatttacagtatattaagGAAGCTGATCTGCTCACAGTACTGAGACCAGTTCAAGCTAGAAAACTGTTGGCTGCATGGAAACAATCCACAGAGACAACTGAATTCCATAGTCAGTCAACATTGACCTCTCCAGTGTCCTCAGCGTGCTCCTCAGTCTCACTGTCTTCCTCACCCTCACCCTCACCATCACCCAGACACATGATTGCTACTGCAGATTGGGTCGACAGCTTCCAGATTCCATGGGAGAAGCTCCCAGAAGCCTTAATGCAGAGTTTGGAGAGAGGGAAAAGGCCAAGCTCAAAGTTACGCAGAGAAATGATCCGAATTGTAGTTGCTGAAATGATGCATGCCTCTTCTTCTCCTGGTAAACAATCCTCCACAGAGGTTGCGAAGAAAATGGTAGCAAAGTATCCACTGTCACTGCAAGATGTTATAGAAGGTGATGTGGTAGGAACAGGATATCACTCACTCGTCAAGCAGCTGCAAGCACGAATTGAAAATGTAAAGCGGTCTTCAGTACCAAGAATATTAAAGCGCAGACGGGGGTCAGATGAATTTGACACAGATGAAATCACAGCTGAACAGAGGGCAGCTGTTCAGGACACATATGGCTGCATAAAGTGGGAAATGAAGTTTATGCCAGTGAGTGAGACACTGGAAAGCCAAgaagagaaaaaagagaaaatgaaagtgaTATTTGAACAGGCAACCTTCAACACAGAGGAGGTAAAACATCTCATGAAGTGCACATACTTCTCCCAGCGTAAATCAGTGAACAGTGGAACCGATCTGCAATTCCTCATGCAAGAGTGGCCTTTCTTATTCAAGGAAGTTGGCATGGCAGTTCACTTTCATGAATTAACTGGTGTTTCCCTGAAAGAGACTTTCCTcagtaatgttgaaaaaaaaggaaaacgtgTTTTAGATTTCATGAGAAGTGTTTGTGCAGAAAAAAGCAAACATGTTTTGCAAGCGGCCACAAAGCTGAAAATTCTGAGAGGACAGCTGGAGGGCTGCTCAGAAGATGTAAAAGATCTGGTGCTCCTCATCCTCTCCTACTTTAATGAAAAAGAGGAGGACTTGTTCTTCTATGTGGAAGAAACTTGTATGGCAAAAGAAGTACAAGTGGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052811 lncRNA upstream 155420 57426160 ~ 57480996 (+) True XLOC_025806
TCONS_00052812 lncRNA upstream 200112 57434261 ~ 57436304 (+) False XLOC_025807
TCONS_00052813 lncRNA upstream 200112 57435382 ~ 57436304 (+) True XLOC_025807
TCONS_00052810 lncRNA upstream 678858 56949955 ~ 56957558 (+) True XLOC_025802
TCONS_00052809 lncRNA upstream 814213 56821699 ~ 56822203 (+) True XLOC_025799
TCONS_00052387 lncRNA downstream 126037 57766624 ~ 57768666 (+) True XLOC_025809
TCONS_00052815 lncRNA downstream 340671 57981258 ~ 57986847 (+) True XLOC_025814
TCONS_00052816 lncRNA downstream 353791 57994378 ~ 57995547 (+) True XLOC_025816
TCONS_00052388 lncRNA downstream 496355 58136942 ~ 58137294 (+) True XLOC_025820
TCONS_00050700 lncRNA downstream 533490 58174077 ~ 58180383 (+) True XLOC_025821
TCONS_00050681 mRNA upstream 312920 57268363 ~ 57323496 (+) True XLOC_025805
TCONS_00050680 mRNA upstream 379341 57234093 ~ 57257075 (+) True XLOC_025804
TCONS_00050679 mRNA upstream 462375 57038033 ~ 57174041 (+) True XLOC_025803
TCONS_00050678 mRNA upstream 717974 56905103 ~ 56918442 (+) True XLOC_025801
TCONS_00050677 mRNA upstream 720707 56905103 ~ 56915709 (+) False XLOC_025801
TCONS_00050683 mRNA downstream 139086 57779673 ~ 57816570 (+) False XLOC_025810
TCONS_00050684 mRNA downstream 148174 57788761 ~ 57795677 (+) False XLOC_025810
TCONS_00050685 mRNA downstream 156665 57797252 ~ 57816877 (+) True XLOC_025810
TCONS_00050686 mRNA downstream 180326 57820913 ~ 57823547 (+) True XLOC_025811
TCONS_00050687 mRNA downstream 185351 57825938 ~ 57830023 (+) False XLOC_025812
TCONS_00050664 other upstream 2152769 55483513 ~ 55483647 (+) True XLOC_025789
TCONS_00050662 other upstream 2337258 55299043 ~ 55299158 (+) True XLOC_025787
TCONS_00050635 other upstream 3568777 54067523 ~ 54067639 (+) True XLOC_025764
TCONS_00050620 other upstream 4807410 52828912 ~ 52829006 (+) True XLOC_025751
TCONS_00050613 other upstream 5016241 52620058 ~ 52620175 (+) True XLOC_025746
TCONS_00050688 other downstream 185352 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050692 other downstream 357403 57997990 ~ 57998559 (+) False XLOC_025817
TCONS_00050699 other downstream 527936 58168523 ~ 58170414 (+) False XLOC_025821
TCONS_00050717 other downstream 1061733 58702320 ~ 58710755 (+) True XLOC_025845

Expression Profile

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