RNA id: TCONS_00052387


Basic Information

Item Value
RNA id TCONS_00052387
length 1778
lncRNA type antisense_over
GC content 0.31
exon number 3
gene id XLOC_025809
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 57766624 ~ 57768666 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATATGGAAAGAATCAAGTGTTTATTGCTCAgtacttcttttaaaaaaaaaagacattggtGCAATAACTGTTGTTACAAAGTAAATGAACAGAAGGACAGCAATTATGTGATATAACAGAGCTGTGAGAATAGAGAACATTTCTCTACCTTTAACAAAACATCCATCAGGAGAGGAAGAAAACAGTGGCCAATATAGATGGATTATCTATTAAtctaatctttcttttttttattttatttgaaacaaaaTCAGTAAAAGTGGTCTAAAATTGTCAACACACAAATACGTTAATACGAATAGAAGTCATTAACTCAATCCCTAACTATTAATTTCAAAATAAGGCACGATTTTCAAGAGGTAGAAATCTTGCAGTGAATTTGGCCGAGCATCGAGAACACATAAATCTAAAGTAAACTTCTGTAAGTCGTCAACAACATTGCATTAAATGATTGTTTAACACTTCAAAAATTAGGCTTTTCCACACAAAGCCTATCGTCtgtcacaaataaagaaaaataaagcataaGTTTACAGTAGTTAATCGGTTCATTTCACACCTAACAGCATCAAACTCTTTATCAGTTAACCACTCCAGCTGAGTAAGTTTATCAAGCTATTTGGCGGATTTAGTgcataaatatttcaaatttgataTATATGGCAGTGCAGAGATTGTAAGGAATCATGGCATTATGGTATGGCATTCTGTTCACTTTCctattgttttgatttatttccTAAAGGCTATATTAGTATAAAAACAAACCTACActaaaaaaatgctgtaaaatatacaatattactGGAAACTTTGGTTgtcagtaatactttaaaatgtataagcACACTATAAATGcacaattacaattgtgctgtaaaactataGCACAATTGCAATTGTTTATTTACTGTGCACatgtaaattttacagcattaCTGGCAACCAGAATTGCTAGTAATAAGGtacattttacagtgtaccttTAGGGAAACCATTGGAATTGATCAACCTATgtcaaatgcaaagaaaaaaaactgctggtGTTGAAAATATCTGCTAGAATAATTTGTGGGAGTGAAAaaagtctacactgtaaaaaaaatgtggggtacactgtaaaaaaaaaaaaaaaaaaaaaaagttgactcaacttaaaattgtaagccAAATTGCTGTGCAGCTATTTTTGAGTTCACTCGACTCTTAACCCAAGTACTGCGCTTGACTAGATTTAAGTTGAACAAGTtgacttacaattttaagttgagtcaagaAAATGTGGGgtagactgtaaaataaaaagttcactcaacttaaaaaattaagacaacttgctgcacagctatttttgagttgactcaacttttaacccaagtactgcacttgactcgatttaagtttacttacaattttaagttgaataaaaaatgtggagtacacagtaaaataaaaagttgacttaacttaaaattgtaaggcaacttgctgcacagctatttttttgagttgactcaacttttaacccaagtACTGCAACTGGCTCGATTTAAGATGAACAAGTTGAATTAAAGTTTTAAGTTGAGTTAAAAAATGTGGGGTACACtataaaaaagttgactcaacttaaaattgtaactTGCTGCACAGCTATTtgtgagttgactcaacttaactGCACTTAGGTCAATTTAAGTTGACtcaactttttaACCAAGGTACTACGattgactcgatttaagttgagcaattacaattttaagttgagtcaaagAAAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052814 lncRNA upstream 125534 57636374 ~ 57641090 (+) False XLOC_025808
TCONS_00052386 lncRNA upstream 126037 57636416 ~ 57640587 (+) True XLOC_025808
TCONS_00052811 lncRNA upstream 285628 57426160 ~ 57480996 (+) True XLOC_025806
TCONS_00052812 lncRNA upstream 330320 57434261 ~ 57436304 (+) False XLOC_025807
TCONS_00052813 lncRNA upstream 330320 57435382 ~ 57436304 (+) True XLOC_025807
TCONS_00052815 lncRNA downstream 212592 57981258 ~ 57986847 (+) True XLOC_025814
TCONS_00052816 lncRNA downstream 225712 57994378 ~ 57995547 (+) True XLOC_025816
TCONS_00052388 lncRNA downstream 368276 58136942 ~ 58137294 (+) True XLOC_025820
TCONS_00050700 lncRNA downstream 405411 58174077 ~ 58180383 (+) True XLOC_025821
TCONS_00052817 lncRNA downstream 419321 58187987 ~ 58192699 (+) True XLOC_025822
TCONS_00050681 mRNA upstream 443128 57268363 ~ 57323496 (+) True XLOC_025805
TCONS_00050680 mRNA upstream 509549 57234093 ~ 57257075 (+) True XLOC_025804
TCONS_00050679 mRNA upstream 592583 57038033 ~ 57174041 (+) True XLOC_025803
TCONS_00050678 mRNA upstream 848182 56905103 ~ 56918442 (+) True XLOC_025801
TCONS_00050677 mRNA upstream 850915 56905103 ~ 56915709 (+) False XLOC_025801
TCONS_00050683 mRNA downstream 11007 57779673 ~ 57816570 (+) False XLOC_025810
TCONS_00050684 mRNA downstream 20095 57788761 ~ 57795677 (+) False XLOC_025810
TCONS_00050685 mRNA downstream 28586 57797252 ~ 57816877 (+) True XLOC_025810
TCONS_00050686 mRNA downstream 52247 57820913 ~ 57823547 (+) True XLOC_025811
TCONS_00050687 mRNA downstream 57272 57825938 ~ 57830023 (+) False XLOC_025812
TCONS_00050682 other upstream 127176 57636374 ~ 57639448 (+) False XLOC_025808
TCONS_00050664 other upstream 2282977 55483513 ~ 55483647 (+) True XLOC_025789
TCONS_00050662 other upstream 2467466 55299043 ~ 55299158 (+) True XLOC_025787
TCONS_00050635 other upstream 3698985 54067523 ~ 54067639 (+) True XLOC_025764
TCONS_00050620 other upstream 4937618 52828912 ~ 52829006 (+) True XLOC_025751
TCONS_00050688 other downstream 57273 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050692 other downstream 229324 57997990 ~ 57998559 (+) False XLOC_025817
TCONS_00050699 other downstream 399857 58168523 ~ 58170414 (+) False XLOC_025821
TCONS_00050717 other downstream 933654 58702320 ~ 58710755 (+) True XLOC_025845

Expression Profile

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