RNA id: XM_021577966.2


Basic Information

Item Value
RNA id XM_021577966.2
length 4922
RNA type mRNA
GC content 0.51
exon number 15
gene id kirrel1a
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 45379310 ~ 45419173 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaggactGCGCCGCTAATGAGAAAACGGACCGTCGCCGAGCACGCAAGAGCAGACAgcaaaaaggagagaggaggaaaaaacGGAGAAATGATCTAAACCGTAAAAAAGAGAGTAGAAAGGGGAGGTGGATAACGACGAAAATCGTCACATATATTCACTGGAAGGATTACAATTGCCCGATAGTGGTGAATAAAATCCAACGGGGTTTTTTGATGCTGTCCTCACGGAGAATTGAGCTAACGGGCTTGCTGGTCTTCTGAACGATGCATAGGCTTCTGCTCCTGAGTTTGGCGTTGAGTTTTCACCGTGTGTGGACAGCGCGTTTCTCCCAGGAGCCAGCGGACCAGTCGGTTGTGCGGGGCCAGAGGGTGATTCTGTCCTGTGTTGTGTTTAACTACTCAGGCATTGTGCAGTGGACCAAGGATGGACTGGCCCTGGGCATCGGAGAGGACCTCAGGGcttggCCGAGGTACCGTGTGATGAGGGTGCAGGAGCTGGGCCAGTATAACCTGGAGATCATCTCAGCTGAGCTGTCTGATGACTCCCTGTACGAGTGTCAGGCCCCAGACGCTGCGCTACGTTCTAGAAGAGCCAAACTCACTGTCCTCATCCCTCCAGATGACCCAGTGATCGACGGGGCCCCTGAGGTGCTGTTGAATGCAGGCGACCACTATAACCTGAGTTGTGTGTCCCGTGGGGCCAAGCCCCCTGCCATGATAGAGTGGCAAAAAGACGGGCTCCCCGTAGACGGAGCAGTCAGCACCACCGAGGTGCTCCCAGACAGGAAGAGGGTGACGACCCACAGCTTCCTGCCCATCCACCCAGTGGACACAGACACAGGGAGGAACTACAGCTGTGTGGCCAGCAACCTGGCTATCCCCACTGGCAAACACACCACCGTCACCCTCAACGTACACCACCCCCCCATGGTGACCCTGTCCATCGAGCCCCGCTCCGTCTTAGAGGGGGACAGAGTCACCTTCACCTGCGCCGCCTCCGCCAACCCTCCTATCATGGGAtacatGTGGGCTAAGGGTGGAGTGATCTTGCAGGGGGCCAGAGAGAGTGTGTTCACCACCAAGGCGGACCACTCCTTCTTCACGGAGCCTGTGTCCTGCTCAGTGTTCAATGCTGTGGGTAAAACCAACGTCAGCATCCTGGTCGATGTACACTttgGTCCTATCCTGGTAGTGGAGCCTAGGCCAGTGACCGTGGACATAGACTCTGATGTCACTCTGAACTGCAAATGGGCTGGcaaccctcctctcaccctcaccTGGACGAAGAAGGGCTCCAACATGGTCCTTAGTAATAACAACCAGCTGTTCCTGAAGTCAGTGAGCCAGGCGGACGCTGGGCAGTATGTGTGTAAGGCCATCGTCCCCAGGATcggagtgggagagacagaggtcaCTCTCACTGTCAACGgTCCCCCCATCATCTCCAGTGAGCCTGTTCAGTATgcagtgaggggggagagaggagaggtcaagTGCTACATCGCCAGCACACCTCCACCGGACAAGATTGTGTGGGCGTGGAAGGAGAACGtgtgggagaaggagaaggggactCTGTTGGAGAGGTACACGGTGGAGCAGAGTAAACCTCTGTCTGAGGGAGGGGCTGTGCTCTCCACCCTCACCATCAACAACGTCATGGAGGCTGACTTCCTGTCCACCTACAACTGTACCGCCTGGAACTCCTTCGGACCTGGGACCATGATCATCACCCTGGAAGAGACCGAGGAGGTACCAGTGGGTATAATAGCAGGAGGGACTGTTGGCTGCACCATCCTGCTGTTCCTGTGTTTACTAGTCCTGGTGCTCATCTTCTACCGACAGCGCAAAGGCAGTCGTCGTGGGGTCACGCTGGGTAAACCAGACATCAAGGTAGAGACAATAAACAAGGAGACCCACAGTCTGGAGGAGGACTCCGGCAGCGTTTCCACAGCATCACGCATGGTCAAGGCCATGTACTCGATTCTGCCCTCTTCtgtgtccttctctccctcctctcagcccTTTAAAGACGATATAGAACTCAAGCAGGACCTGCGTAGCGATACGCTAGACACTCGCCAGGAGTACGACCTGAAGGACCCCACCAACGGCTACTACAACGTGCGAGCCTCCACCCTTGACGAGGGTCGCCCTGCCTCCCGCTCCATGCACTACTCCGACTACCGGCCCTCCAACACCCCAGGGGGAGCTGCTTCTGTCAGCAGCAGTGCTGGAGGATCAGGGGCCACAGCCAGCGGAGGAGGCCCTCCAGGCCCAGGGACCCTCTCCACCCCCGGTCGCCCCAGTTGCTACGACCCCCGGCCCCCCTCCAGACTCTCCCACAACAGCTACGCCCAGTTCAACACCTTCACCCGGGCTGGGCAGAGCCAGCAGCCCCCTCCCAACCCCCCGCCGCAGACCAGCGACTTCCCTGGGGACTGCAGCCTGTTGGACTCCCCTCAGCTGGCCTATGACAACTACGGCTATCCCTCTCACCCCTATACCCCCTACCGCATGGGCTTTGCCCCGCCCAGTCTGGCTCCATTGGAAACCGGGCCTTCCTATGAGATGTACGGAGTGGGGTCGGGGGTGGGGCCTGTGCCAGGGGTGGGGCCTGGTGTGGGGCTGGGGGCGACTCCGTCAGGGTCAGAGACTGGACTGGGGAAGTATGGAAGCTCCACCCGCTTCTCCTATACCTCGCAGCAGTCTGACTACGGccacagaggacacacacagaggatGCAGACACATGTGTGAGATGGATAGCTGACATACAGTGCACAGTCACATATGCGGTGAGGGTGCATTCTcatactacacactgtcactcagacgCACACAGAGGCCGCACACACGCATTCACATTCTCAAACATAcgcacatatactgtacatgtgagcacacacacgcagatatacacacagacacacgcagacacacacacacacagaggagttaGAATTTCCCCACGAGACAGGGagggtgtgagaaagagagagtccagaTCAGTGGATAACGAGTGAATTCCTGGTAATCTAGAATTCCCACAATCCCAGTGTTCAGATCTTCACTCTGAAAGAGCGGAAAGCAAAAGTCCAATCAAGACCAGAGAAGACGGGACTAGAGAGAACAAAAGATCTTTAGATGTTAATTATCGAAATAAATAGCATGTGTGCTATGAATTTAGATTGTTGTGAATGACGAGAGGGAGCGCTACAGGCAATTTATTCCATATTCGATTGCCAAATATTACAGTAAGGCATATCATGGAGAAATTGACCGTCAAGTATGGTACTCATTCGAAGGGCGGGAGAAACCTCAACCAGTGGAGGGTCATGACTGGCCGCCATTTTGTTTTAGCTGGTTGTTGTTTTATACAGTGATTTTAGAGCACATATATATCCCACATTGCTCCACTTCATTGGCGCCATTGGTGCTGGTTAGTGGGGTCATCGTACGTTTTGCACTGCATTACAAACAGTATTCATTGCTTAGAAATCCATCATCTACATATATCTGTATTATATGAGTCTGTTTTTATTTGCACACCAACAAACTAGAGCTTTCTATtctattttttaacattttacaGAATTATTTTGGTCATATTTCTGTGAAGGAAGTGTCTGtggaccaagatgttcaaacttgAGAGTGTTTAGTCTTTGTTTGGGTGATATTCACCTCAACAAACAAAGAGAAACACAAAGAAGTATTTGAGTACCTGTTTTTGTCAGCCATGATGACTGGCAAGATTCAGGAAGGGGAGGGTATACAAGAACCTTTTTTCCAAGTGTCCATGTTTGCTCTTTATTTGATGTAAATCTGGGGTTACAAGCATTTAAATGCAGTAGATACCATGCAGGAAGTCCTTATATGGGAAGGTGTTCAGGCCTTGAGGCAGTCCGGGCGTATGGAACTACAGTATAAGCCTGCTAGCCTGGCATTCAAACTGAATTTTCTACGTTTCACCATTTATATGAACTACATATTTTATATGGTGAAACATAGCGGATTCCGCTTGGATCCAGGCTATAAACCTTAGTTTGGTGCCCCCTGCTGAAATAGAGAGAGGTGACGTGGTAGCCTGGTTGCAGATCTGGTTATGCTGTCTTGCCCACTCCTACGGTCATTGTCACGCTTGCGAACAAACAgcacctgggaccaggctagtgagaTGCTGTGTATAAGAGTGGCCTTAGGGAACATGCGGTAATGCTTTCATCATTCATTCCTCCTCACACACAATCAGCCACGAGGGCCAGAGGAGAATGTGTGTGGAGAGGTTCAATGAAGGTTTGTCTACACTATTGATATACGGATAGTGGAGTGCTATTGTGCGAATGTTTGTgcgtgaaagagagagtgtgtgtatgcacaTCTATTTGTACAGTGtttgtataggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaatgcataGACATACAGTTCTCTACCTGCGTGTGAATGTGACTATTGTATGCAtgtcagtgtgtacagtatgtgtgtgtgcatgtctgtatgtgttcatgtgtgtgagtGCGTTTCAGTAATATGTCCATATCATTTCTCTTCACGATCCTGTTCCAATACTTTTATACCTCTGGTAGGACTGTATCCTGTATTATTGTGTCTTTGAATTTAGAAATACAATGTTTATCTTATTGTACTGTTCTACGTAGCAGAAAAAAAACTGTTCAAAAGATGTACAACAGAAAGTGATCAAATTTTCATTTTTTAATTTCATTATCTccaatatttttaaaaaatggtatGTAATTATTTTTCCACAGTATAACAGAAATAAAAAGCActgttttttataaaataaatcA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1995205 lncRNA upstream 11098 45364584 ~ 45368212 (+) True il13ra1
TU1995260 lncRNA upstream 115696 45263230 ~ 45263614 (+) True G1742308
TU1995246 lncRNA upstream 135134 45230536 ~ 45244176 (+) True G1742298
TU1995105 lncRNA upstream 333665 45042866 ~ 45045645 (+) True G1742167
TU1995093 lncRNA upstream 350662 45027945 ~ 45028648 (+) True G1742156
TU1995324 lncRNA downstream 3124 45422297 ~ 45426947 (+) True G1742371
TU1995332 lncRNA downstream 61302 45480475 ~ 45521688 (+) True G1742379
TU1995372 lncRNA downstream 102954 45522127 ~ 45522440 (+) True G1742416
TU1995334 lncRNA downstream 106204 45525377 ~ 45525723 (+) True G1742381
TU1995336 lncRNA downstream 107179 45526352 ~ 45526612 (+) True G1742383
trnar-ucu-9 mRNA upstream 1228 45378009 ~ 45378082 (+) True trnar-ucu-9
XM_021577965.2 mRNA upstream 11098 45359504 ~ 45368212 (+) False il13ra1
XM_036957959.1 mRNA upstream 20018 45247575 ~ 45359292 (+) False dock11
XM_021577968.2 mRNA downstream 13407 45432580 ~ 45444197 (+) True ndufs2
XM_021577971.2 mRNA downstream 25188 45444361 ~ 45449712 (+) False fcer1g
XM_021577970.2 mRNA downstream 25201 45444374 ~ 45449712 (+) False fcer1g
XM_036957964.1 mRNA downstream 36486 45455659 ~ 45474914 (+) True nectin4a
XR_005038617.1 mRNA downstream 66074 45485247 ~ 45512431 (+) False LOC110500870
TU1994553 other upstream 906746 44461382 ~ 44472564 (+) False LOC110500529
TU1994546 other upstream 927778 44446560 ~ 44451532 (+) True LOC110500528
TU1993553 other upstream 1166080 44212786 ~ 44213230 (+) True G1740752
TU1993210 other upstream 1852584 43524736 ~ 43526726 (+) True G1740453
TU1993165 other upstream 1908985 43469818 ~ 43470325 (+) True G1740412
TU1995329 other downstream 25354 45444527 ~ 45448687 (+) True fcer1g
TU1995333 other downstream 66099 45485272 ~ 45493952 (+) True LOC110500870
TU1995371 other downstream 129944 45549117 ~ 45555589 (+) True si:dkey-38p12.3
TU1996084 other downstream 220123 45639296 ~ 45639742 (+) True G1743043
TU1996124 other downstream 287969 45707142 ~ 45709950 (+) True G1743077

Expression Profile