RNA id: XM_021577968.2


Basic Information

Item Value
RNA id XM_021577968.2
length 1639
RNA type mRNA
GC content 0.53
exon number 13
gene id ndufs2
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 45432580 ~ 45444197 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCAAAGAAGAAGACATTACGTCACCGGGTGCAGAGTAACTTTGACTGCCAAGATGGCGGGGACAATGTTGAGGTCGCTTAGCAAACTTGGACGTCCTTCAACAAAATTGATTATAAATAGTAATTTGGTCAGCCCTGCTTGCACTGTCCTACAAAACAGGCAGAAACAGTGGCAGCCAGATGTGGAGTGGACGGAGCACTATGCTGGGGCGGTGATGTACCCCAGCGCCATCACTGAGAAATGGGTCCCCCCACCATGGAATGATAAGGATGCTCCTATGGAGAAGGAGGTGTCTAACCTGACCATTAACTTTGGGCCCCAGCACCCCGCAGCCCATGGCGTGCTGCGTCTGGTGCTGGAGCTCAGCGGGGAGTCAGTGAAGAAGTGTGATCCCCACGTGGGCCTGCTGCACCGCGGCACAGAAAAACTCATTGAGTACAAGACCTACCTACAGGCGCTGCCTTACTTTGACAGGTTGGACTACGTGTCCATGATGTGTAACGAGCAGGCCTACTCTCTGGCCGTGGAGAAGCTGCTCAACATCCAGGCCCCACCCCGCGCACAGTGGATCAGAGTTCTTTTCGGAGAGCTGACTCGCATCCTGAACCACATCATGGCCATCACCACCCACGCCCTGGACATCGGAGCCATGACCCCCTTCTTCTGGATGttcgaggagagagagaagATGTTTGAGTTCTATgagcgtgtctcaggggccaggatgCATGCAGCCTACGTCAGACCTGGTGGAGTACACCAGGACATGCCACTGGGACTAAtggatgatatctatgagtggTGCAAGAACTTCTCCATCAGAATAGACGAGGTGGAGGAGATGTTGACCAACAACCGTATCTGGAAGAACCGCACCGTGGACATCGGGGTTGTGTCTGCAGAGGACGCACTCAACTATGGCTTCAGTGGTGTGATGCTGAGGGGTTCAGGCATCAAGTGGGACCTGAGGAAGTCTCAGCCCTACGACAAGTATGACGAGGTGGAGTTTGACGTCCCCATCGGCAGCAAGGGAGACTGCTACGACAGGTACCTGTGCAGGGTGGAGGAGATGAGGCAGAGTCTCAGGATCATGATCGAGGCCCTCAACAAGATGCCAGCGGGAGAGATCAAAGTGGACGACGCCAAGGTGGCCCCGCCCAAGAGATCTGAGATGAAGATGTCCATGGAGTCTCTGATCCatcactttaagctgtacacagAGGGTTACCAGGTGCCCCCCGGATCCACATACACAGCTGTAGAAGCACCCAAGGGAGAGTTTGGTGTGTATCTGGTATCTGACGGCTCCAGCAGGCCCTACCGCTGCAAAATCAAAGCTCCAGGATTCGCTCACTTGgcTGCCCTGGATATGATGGCTAAAGGACACATGCTGGCTGACGTAGTGGCCATTATTGGCACCCAGGACATTGTGTTTGGCGAAGTTGACCGTTAAGTTAACACCTGACTGTTGAAAGATGACACCCATGGTTCCACTCTGAAGAGGATTTCTCAGCGCTGTCTTTACTACCTTGTTTGTCTCTCATTCACTGTACTGGGATTTTGACAGATGGGCCAACTCGTAATCATTGACGTATAATGCTGTAAACCTAATAAATATTTTATCTCTGATCGGTCAAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0051287 NAD binding molecular_function
GO:0048038 quinone binding molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function

KEGG:

id description
K03935 NDUFS2; NADH dehydrogenase (ubiquinone) Fe-S protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1995324 lncRNA upstream 5633 45422297 ~ 45426947 (+) True G1742371
TU1995205 lncRNA upstream 64368 45364584 ~ 45368212 (+) True il13ra1
TU1995260 lncRNA upstream 168966 45263230 ~ 45263614 (+) True G1742308
TU1995246 lncRNA upstream 188404 45230536 ~ 45244176 (+) True G1742298
TU1995105 lncRNA upstream 386935 45042866 ~ 45045645 (+) True G1742167
TU1995332 lncRNA downstream 36278 45480475 ~ 45521688 (+) True G1742379
TU1995372 lncRNA downstream 77930 45522127 ~ 45522440 (+) True G1742416
TU1995334 lncRNA downstream 81180 45525377 ~ 45525723 (+) True G1742381
TU1995336 lncRNA downstream 82155 45526352 ~ 45526612 (+) True G1742383
TU1995380 lncRNA downstream 89764 45533961 ~ 45534179 (+) True G1742420
XM_021577966.2 mRNA upstream 13407 45379310 ~ 45419173 (+) False kirrel1a
XM_021577967.2 mRNA upstream 13407 45379310 ~ 45419173 (+) True kirrel1a
trnar-ucu-9 mRNA upstream 54498 45378009 ~ 45378082 (+) True trnar-ucu-9
XM_021577965.2 mRNA upstream 64368 45359504 ~ 45368212 (+) False il13ra1
XM_036957960.1 mRNA upstream 73288 45247575 ~ 45359292 (+) False dock11
XM_021577971.2 mRNA downstream 164 45444361 ~ 45449712 (+) False fcer1g
XM_021577970.2 mRNA downstream 177 45444374 ~ 45449712 (+) False fcer1g
XM_036957964.1 mRNA downstream 11462 45455659 ~ 45474914 (+) True nectin4a
XR_005038617.1 mRNA downstream 41050 45485247 ~ 45512431 (+) False LOC110500870
XM_036957965.1 mRNA downstream 41050 45485247 ~ 45517233 (+) False LOC110500870
TU1994553 other upstream 960016 44461382 ~ 44472564 (+) False LOC110500529
TU1994546 other upstream 981048 44446560 ~ 44451532 (+) True LOC110500528
TU1993553 other upstream 1219350 44212786 ~ 44213230 (+) True G1740752
TU1993210 other upstream 1905854 43524736 ~ 43526726 (+) True G1740453
TU1993165 other upstream 1962255 43469818 ~ 43470325 (+) True G1740412
TU1995329 other downstream 330 45444527 ~ 45448687 (+) True fcer1g
TU1995333 other downstream 41075 45485272 ~ 45493952 (+) True LOC110500870
TU1995371 other downstream 104920 45549117 ~ 45555589 (+) True si:dkey-38p12.3
TU1996084 other downstream 195099 45639296 ~ 45639742 (+) True G1743043
TU1996124 other downstream 262945 45707142 ~ 45709950 (+) True G1743077

Expression Profile