RNA id: XM_036957968.1


Basic Information

Item Value
RNA id XM_036957968.1
length 7149
RNA type mRNA
GC content 0.54
exon number 30
gene id LOC110500870
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 45485247 ~ 45517233 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGCACGCCGCCCCAGTGAAGATGGCGGCTGAGCTGCACCCGCGCAGCGGAAAACTGATCGGACTGTCGAATTCGAACAGAACCGCTCAGCGGAACCAACCAGTCCAAGAATTTAACCACGGGTTAGTTCTAAGCAGAGAGCCACTGAGGGACCGGGATGTATTCACCGTCCGTATTGACAAGAAGGTGAACTCATGGAGCGGCTCCGTAGAGATTGGGGTGACTGCTCTGGACCCGGCTTGTCTCGATTTCCCCAGCAGCGCTACGGGTCTGAAGGGAGGCTCCTGGATCGTCTCTGGCTGCTCAGTCCTACGCGACGGCCGCTCCGTTCTCGAGGAGTACGGCCGTGACCTGGACCAGCTGGCCGAGGGCGACCGCGTGGGCATACAGCGGAGCGCCCGTGGCGAGCTCCACCTGTGGGTGAACGGGCATGACTGTGGTGCAGCTGCCAGCGGTCTCCCGACACGCCTCTGGGCGGTGGTGGACCTCTACGGCAAGTGTACGCAAGTGACGGTGGTGAGCTGCGAGCCGCCCTCCTCGAtggagagagatacggagagggagACGGTGGAGGGGcatgaggaggtggtggtgtgcgGGGTCCAGGAGGGAGACACCGAGGATCTGACGTCAGTGGTGAATCTGGCAGCAGCGACAAACGGGACGACAGAGGAAGTGCCGGAGCTCCCTCCTATTCACAACCGACCTGACAAGTTCCCCAACAACATAGAGCCTGAAACGGCTCTGACGGAGCACCAGCTCTTTGACGTGTTCAACAATGCCATCGTGTCCCTCTACCGCTCAGAGGACGAGGGCGGAGGAGGACGAGACCTGGGGGGAGGAACAGGGACAGACTCTgggacaggaggtagaggggACAGGGGGAGCAGCAGCGGCGGGGGAGCTgtcaacagtaacagtagtaacagtgacAGCGGGGCCGGGACCGGCAATACCGGAAGCACCAATAACAGCCCCGCAGGAGTGGCGGGACTTGGGGCAGTGACGGGCGGGATGATGACCAATGACGCGCTGCTGTTCCATGAGAAGTGCGGTACGCTGATCAAGCtgagcaacaacaacaagacGGCGGAGAGGCGGAGGCCGCTGGATGAGTTCAACAACGGCGTGGTCATGACCAACCGGCCGCTCCGACACAACGAGATGTTTGAGATCCGTATAGATAAGCTGGTGGACAAGTGGTCGGGGTCGATTGAGATCGGCGTGACAACGCACAACCCCAACAACCTGGACTACCCTGCCACAATGACAAATCTGCGCTCAgGTACAATCATGATGAGTGGCTGTGGGATCCTGACTAACGGCAAGGGGACCCGTCGGGAGTACTGTGAATTCAGCCTAGACGAACTGCAGGAAGGGGATCACATAGGCCTGATGCACAAGGCCAGCGGAGCTCTTCACTTCTACATCAATGGCATCGACCAAGGCGTGGCGGCGGCCCAGACACCTCCCATGGTCTACGGAGTGGTTGACCTCTACGGCATGGCGGTCAAGGTGACCATCGTCCACAATCACAACCACAGCGACCGGCTGCGTCGCAACAACGCCATAATGCGGGCGCTGTCCCCCGACGTGGGCCGCCCCCGGCCCGCCCTCTCCCTCACCTCCGACCCTGACGCCACTGACCGCCTCCTCTTCCACACCAACTGTGGGCAAAAGGCGGCCATCATCAGTGAAGGCAGGACTGCTCTTCGCCCTCATGCGACGGACGACTTCAACCACGGCGTGGTCCTGAGTGGCCGCCCGCTGCGCTCCAACGAGGTGTTCCAGGTGCGCATCGACAAGATGGTGGACAAGTGGGCGGGCTCCATTGAGATTGGCGTGACCACGCACAACCCCGCCTACCTGCAGCTGCCCTCCACCATGACCAACCTGCGCTCAGGGACGTGGATGATGACCGGGAATGGAGTGATGCACAACGGAACCACCATACTGGACGAGTATGGACACAACCTGGACCGACTCAAAgCGGGGGACACGGTGGGCGTGGTGCGTAAGGAGGACGGGAGCCTCCACTTCTTTGTGAACGGGGTGGCGCAGGGCCCGGCGGCGTGGAACGTCCCGCCCAGCGTCTACGCCGTGGTGGACCTCTACGGCCAGGCCGCACAGGCCACCATCATGGACGACATGGcggacctcccccctctcccagAGGACAGCTCGGAGGGCCCCACCGTCATGTCGCCCGGCAGCCCATGCTCGGTTGCCGGGGGCAACAGTGCCAACGACCTGCGCTTCCACCAGCTGCACGGCACCAACGCCGTGATCACCAACGGGGGGCGCACTGCCCTCAGACAGAACTGTCGCTCCGAGTTCAACGACGCCATCGTCATCTCCAACAGGTGCCTTCGAGACGGAGAGCTCTTTGAGATAGTCATTCAGAAGATGGTGGACCGTTGGTCGGGGTCAATAGAAGCAGgTGTGACTTCCATCAGGCCAGAAGAGCTGGAGTTTCCTAACACCATGACGGATATAGACTACGACACCTGGATGCTTAGTGGCACGGCCATCATGCAGGACGGCAACACCATGCGTAATAACTACGGCTGTGACCTGGACTCCCTGACCACGGGCAGTAGGATCGGCATGATGCGCTCGGCCACCGGCGACCTCCACTACTACATCAATGGGGTGGACCAGGGTGTGGCCTGCACCGGACTGCCGCCGGATAAAGagGTGTATGCGGTGATAGACCTGTACGGTCAGTGTGTCCAGGTGTCCATCACCAGTTCCTCTGGCCCTCTGGACAACAGTCTGTGTACCAGCAACATAACAGAGAAGAGCTTCCCCATACACTCACCAGtggcagGCGTGGCCCACCGGCTTCACAGTAAACATGGTAAGAACGTGGTTCTGCTGGGAGAGGGCTGCCAGGCCGTCCGGGTAGGAGGATACGCTCATGGCATCGTCTTCAGTGCCAAGGAACTCAAAACAGACGAATTGTTCGAGGTGAAGATAGACGAGGTAGATAACCAGTGGTCTGGTTCCCTCCACATGGGTCTGACTAGCCTGGCCCCCCCAGAGCTGCCCTCCTGCCCCATGTCGGGCCTGTCCCCCTCCCTCACGCAGCTCCGCGCCAAGGTCACCTGGCTGCTGGCAGGGTCAGAGGTCCGACGCAATGGGGTCCTCCAAAGACAGAACTACGGGGCATCCCTGGACAGATTGacgGTGGGGAACCGCGTGGGTGTGAAGAGATGCAGTGATGACACAATGCACGTCCTCATTGACGGAGAGGACATGGGAACAGCTGCTACCGCTGTagccaagAATGTCTATGCGGTGCTGGACCTGTATGGTCGTGTGACGGCTGTGTCCATTGTCAGTTCTTCAGTGCTGGAGGATGCAGAAAGCATCAaggccccctccctctcctcagacAGCTGCAGCGACGGCGAGGAGGACAGCACGCCGGTTGGGAGCAGTAAGCTAGCCCTGGTGCCCAACACTGTCATGGCCTTCCTGGAGAACCATGGGAAGAACATCCAGCTGTCCAATCAGAACCTGACGGCCGCCCGTGTCTCCAGCTACAACCAGGGCCTTCTGGTCACAGCACAACCCCTGCCCAGACAACAACTGTTCCAGTTTCAGATTGACCGCCTGAACCCGTCGTGGACGTCGTCCTTGTCGCTAGGGGTGATAGGTCACTCCCCCGACCGCCTCAACTTTCCCTCCACGGCGTGCTGTCTGAAACGCTCTGCCTGGCTGCTGCAGAGAGACTCTGTCTTCCACAACTCACTGAAGATCTGTGAGAACTATGGTCCTAACCTGGACACATGTCCAGAGGGTACAGTATTGGGTCTACTAGTGGATGGGAACAGCTGTCTGCACCTCCATGTGAACGGGATGGACCAGGGGGTAGCAGCCCAGGACATCCCCACCCCCTGCTACCCCCTCATAGACCTCTACGGGCAGTGTGAACAGGTTACAATCGTGACTGACAACGTGCCAACCGTGGGAGGGGAGAGCGGCGAGGCGCGTTGCCAAGGCGACATGGAGAAGGCGGACATGGTTGACGGGATCAAAGAGAGTGTGTGCTGGACGCCCCCTCCAGAGGTCAACCCCAACAAGACCTGTGAATACCAGGCCCTGTGCTCGCGCTTCAAGGACCTGCTCACGCTGCCAGATGGTTACTTCAACGAGGATGCCAAGTATAACCTGTGTTACTGTGAGTCTTGCCACAAGCTGCGCGGAGACGAGTCCTACTACAAGAGAGGGGAGCCCCCCCGGGACTACGCCCTGCCCTTCGGCTGGTGCCGCTTCGCGCTGAGGATCAAGGCCCACTGTGAGGTGTCTAGTGCATTTAAGAAGTGGCACATAGCCTACCACGGCACCAGTGTAGGGGCTCTGAGACGCACTCTGGACCATGCTCAGCTGCTCTCTGGGACTTCGTCCATCTTCTCTGTGTCTCCGGCAAAGATGGAGGGTCCTAACGGCTACAGTGAGCCAGAGGAGAACAGCAACAGCCTCCCCGACAGGGAAAGGGACAAGGAGGTCCCCCGGGTACAGCTGTCCCCCACCATGCGCTATTCCGGCCTGGAGATGTTCGCCCCTAAAGTGCAattCCGGGACCCTCGTTCTCACTGTTGTCACCAGGCCCAGGTGGGTTTCCAGGTGTGCGTGCGGCCGGGCTCTTATAAGGTGGGTCCCCAGAACCTTGGAGCCAGCGAGCCCCTTGACCCCCGCTTTAGCAACACAGAAATCGAGTGGATCACCAAGGAGCAGGGGGGCACCCTCCTCTACGGCCTACTCATACGggtggagtgagggagggatgaaCAGCAGGATGGATAGAGTGGAGATAAGGGAGCTTCTCTATCCCAGCGGTGCCTCCAAAACCTCTACTCCATCAACCAAATTCCAGACTTTGAGACTCTTTGGAATTTGGGTAATTTCCCTCCtgttcctggggggggggggggggggggggggggattgttgACATTGACAGTTCAGCATTATTTTAGTTTATTTTGGACAaagtacatttttgtttgttttggaatAATTTTAACAGGGTGGGGCTTTGGTGGATTCAGAGAAGAACAACAAGACTGACGCTGCCTGCACTTCATGTTTTGAACACTTTGTGggctatttaaaatatatatataaaaaaacaagtAAAAAACAATCTACCTATCATTCACAATACAACACTCGTTTTTGGTCACCGCAGTTTTTCTTTTAGCACTGTTGTCCTCTCTAGCTCTTGTTTTTATCACCTTTTATCCTAGCCTGAtcactctcctcactctctttATGGTTCTCAAGTACATGGGGGCGATGGTGCTCCTCAGTTCTCAAGGCTGAGTGCACAACCGGAACCGGTCACGTTCCAAGACTTGGACCGTTCCTTAAACCTCCTCGCaatgttgaccccccccccccccccccccccccccctcatcgcCTGCTGCTCAGAACGGTCACTGACTCTTGGACTTTATAAACTAAAGACTTACCCGCGTGTcaatggaggaggagaaagacTGGAAATATCCCTGAACAGGAGAAGGACCTGAGAGCACCTTTTTTTAGAGGGAGGAACAAAAACAAACGTGGAAGAAAATGTTTACAGGTGTAACGCTAACCACTGTCTGTCTACATGTATGAGTCGGACtcgtcctctccatctccctcccctctactcacACCTGtcctagtttttttttaaattcttcgtTAGTGGAAAACGCTTCCCTAAGACAAGGGTACTTTCTCGTTCCCATGTTGCAGAGGTATAGATATATACACTGtttcttgtggggggggggggggggtctattcaATTTCTGTCTGTTTCACCGACAAAGCTATCTGCATCTTGAATAGTGTgaagtggcttcctctccttagtcctcttctcctttccttcacTGATCTGAAGGAAAGGAGCAGATAGACATGTAATGAATAGAGCTGACATGATTCTGTACCAGATAGGCATGTTTGTTCTTCATAACATAGTACTATCTGAACTTTACACAATGTTGTGGCCTGCTGAACGTGCCTGTTTTCACACGTCGTCGTTTACACTAGAGTTGCGTTCAAGTCTTTAAAGACTGTAACGTATCGGTCCCATTATGGCGTCGGTGAGCATACGGGCAGTGTCagtgaggccatctccatttttaaactagtacattttcttctacttctgagttggtaaacaaactgaaagggtgtgCACTGCCACctagagtgtgttgtttgaacagatataaagccaaggttggctATTCATGGATTCATGCAGTCATGGAATGTTTGCTTAcgagtataattcattggctgatccctggATGGAATTTTATGACgcttccttaacccataggaaggcccacccagttgactacttaatAATTGTGAAGTCCccaatggcactgcccatgctcAAACTTGCTTCTGGACACCTCTATAGAACTCTATGGTCATTGTTTTAACAGGGAGAAATGTTCAGAGCCAATCCTTATTGGGGTGTGCCCTCACATTGGTGTGTCCGTGCAAATACTCTTGGGAAATGCAGTATTTAACGAAATGCAGGCCCTGATGCTGGTGTTTACATTGTGAATGTAATTCATTAGGGTTTTTGTCATTTAGTTTTTTGTGGTCTGTTTACGTTGAAACTAACACCCTTCATTTGACATATTACATGAAAAAAAGATTAACACTGGTTCATTCATTCCTTCCCCAAATATTTGATTGTATGTGGACGACTCTAAAGCATATCTTCTTTTAACCATGTATTTTGTTGCCAATCTGATATATACTTACGTATGACTTACATTCATACATAGCCACGCCATCTTGCCAAGTCATTGTTTTGACAGAGGAGAAAAACAGGTTGAGTCAAGATCCAAGGTTCAGTTGACTTTCCTCACACACAACTGTGTATAACCTAATTTCATTGCAACAAAAAAAGTGGGCTttgaagaaggaaaaaaaaaaaaagaacttgCTTGCAACGTCCAATCAATGTGAAAAATGATATGGGGttatttaaaggcccagtgctgcTTTTTATGATACTTTTTTTTCTGTATGTTGCATTTGTACAGGCTGTTACATAACATGAAATCATATCTTCCTGATTTGTAAAAATAAATGGACAGAGTATGTACATGATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1995324 lncRNA upstream 58300 45422297 ~ 45426947 (+) True G1742371
TU1995205 lncRNA upstream 117035 45364584 ~ 45368212 (+) True il13ra1
TU1995260 lncRNA upstream 221633 45263230 ~ 45263614 (+) True G1742308
TU1995246 lncRNA upstream 241071 45230536 ~ 45244176 (+) True G1742298
TU1995105 lncRNA upstream 439602 45042866 ~ 45045645 (+) True G1742167
TU1995372 lncRNA downstream 4894 45522127 ~ 45522440 (+) True G1742416
TU1995334 lncRNA downstream 8144 45525377 ~ 45525723 (+) True G1742381
TU1995336 lncRNA downstream 9119 45526352 ~ 45526612 (+) True G1742383
TU1995380 lncRNA downstream 16728 45533961 ~ 45534179 (+) True G1742420
TU1995381 lncRNA downstream 17459 45534692 ~ 45534908 (+) True G1742421
XM_036957964.1 mRNA upstream 10333 45455659 ~ 45474914 (+) True nectin4a
XM_021577971.2 mRNA upstream 35535 45444361 ~ 45449712 (+) False fcer1g
XM_021577970.2 mRNA upstream 35535 45444374 ~ 45449712 (+) False fcer1g
XM_021577968.2 mRNA upstream 41050 45432580 ~ 45444197 (+) True ndufs2
XM_021577967.2 mRNA upstream 66074 45379310 ~ 45419173 (+) True kirrel1a
XM_036957971.1 mRNA downstream 27283 45544516 ~ 45565742 (+) False si:dkey-38p12.3
XM_021577982.2 mRNA downstream 125628 45642861 ~ 45648249 (+) True si:dkey-19b23.7
XM_021577985.2 mRNA downstream 160428 45677661 ~ 45686049 (+) True LOC110500572
XM_021577986.2 mRNA downstream 171217 45688450 ~ 45702662 (+) True LOC110500573
XM_021577990.2 mRNA downstream 227377 45744610 ~ 45755368 (+) False LOC110500577
TU1995329 other upstream 36560 45444527 ~ 45448687 (+) True fcer1g
TU1994553 other upstream 1012683 44461382 ~ 44472564 (+) False LOC110500529
TU1994546 other upstream 1033715 44446560 ~ 44451532 (+) True LOC110500528
TU1993553 other upstream 1272017 44212786 ~ 44213230 (+) True G1740752
TU1993210 other upstream 1958521 43524736 ~ 43526726 (+) True G1740453
TU1995371 other downstream 31884 45549117 ~ 45555589 (+) True si:dkey-38p12.3
TU1996084 other downstream 122063 45639296 ~ 45639742 (+) True G1743043
TU1996124 other downstream 189909 45707142 ~ 45709950 (+) True G1743077
TU1997842 other downstream 1646671 47163904 ~ 47167654 (+) True G1744645
TU1999487 other downstream 2577534 48094767 ~ 48095119 (+) True G1746210

Expression Profile