RNA id: XM_021577985.2


Basic Information

Item Value
RNA id XM_021577985.2
length 2506
RNA type mRNA
GC content 0.39
exon number 6
gene id LOC110500572
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 45677661 ~ 45686049 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTAAATTATTAACAGCCTAGACTTTACGGTTGTGATGTAAAAGCGAGTTTATCACGTTCCTGCACTTTTCCGGATTACTGTACCTTGGTCtgacctctgtctgtcttttaatATTCTAAATCCTTGATATATATTTAATAATATGGATTTCTCCATTCGTGCTTCTACACTAGAAGACTGCAAAGATATCGCGCGGATGATCTTGGAACTGGCTGAATACGAGAAGGTCTTGGACCAAGTGAAAGTTACACAGAAAGATTTGGAGCAGGATGGGTTCATTAAAAACCCATTCTTTCATGGTATCGTCGCAGAAGTACCCGAACAACACAGGACcaaagagggCCATGCCAAGGTGGGCTACGCACTTTACTTCTATACCTACAGCTCGTGGAAAGGACGGGCCCTCTACATGGAGGACCTGTATGTGATGCCTGAGTTCAGAGGTAAAGGTATCGGGAAGGCACTGATGAGCAAAGTAGCTCAGTTGGGCCTGGCCGCCGGCTGCACCCAGCTCAACTTCGCCGTGCTGGACTGGAACAAACCGTCTCTGGATTTCTACCTCAGCCAGGGATGTTTTGATGTGACGGCAGACATGGGGTACCACTGCATGCGCTGTGAGGGGGCAGCGCTGGAACAACTGGCCCAGGGGGACACTTAAACACCACCCGCCCCCCACTGGGTTGACGTCTGACCATTGCAATACTGAGGTCAACCTAGAACATATGCAGGGATAAAGAACCAACTCAAAGCACCTGTCTCAATACTTAAAAAATGCACCTTTCCTTTCCTTCTTCTTTTCCTTTCCTgtagtaaagtagtcactgaTTTAATATGATTGAATAGGCGAACATTAGGGAATTATTTGCATAGCTCTCATTAATCTACTAATATCAGATCAGTGATTACCTAACGAAACGAGGAAGACAGGATGTATTTTCAAAGTGTTGGAACGATGCCAATGCAATGCAAAAAGGTTGTAGCTGAACTAACAGTTCACCAACTATCTTATAGTTGTTGACATTAGTTGTGTGAACAGTAATGTGTTGTTTACCTGTGACCCCATAGCACCTTTCCCTGCTTTCTAAGCTAAGGTAAGAGACACCCATTGATAGTATGTGAGAAATCTGGTGAAACGGGAACCTATACAATACTATAAATCACAtgagagcttgggactataaggttctacaGTATGTGCATTTTTGTCAACATTTTGTTATTGACACAACCATGTTCTTTCTGTTTAAAGTACTCTTAATTCCCCAATTCCTGTTAAGTTCAAACGAAATACAAGATAAAAAGgtctgacaccattcaaaccagtGGGTTTTGAAAtttaaagccaattatctcagaatcatctttttTTTCAGATATAACCTTATCCCAAGCTCTCCACCTGTCAATGGATGATTATAACTACTGTATAATTGTTGTTGTGATGAAgcacaatgtgatttttttcaaCTGATTCCTGTTTCACCTTCAACAGGATGGAATGCCTGTTTAAGTTACTTGATTAGCTTCTGCAAGCTCAGGCTGTTGCTTTAAGCAAATATGACAAACCAAGGCTTGTAATTTGCGATAGTGATTCaagaacattttttaaaaatagatttattttaatgaaaatatgtttgatctgatttatttattttaaatctcAAGATTATTAGATGGTGGGCAATAACACTACGAAAAAGGCAATTAAATATGGCATTAGCTTATAGTTCTATTCGTGGCATTTTCCAtcaacaatacattacaatatgTTGTTCACCATCAACCTATAAACTaagcaaaaacaatcaagcaaagCAATTACATGAAATACGGTGATTAAGCTACAGTAGATCAAAGACCAATCTTACCAGCAATTATAATAACGTACCATATAAGATAGTACTCTGGATATGTATTGCAAACAGTCTCTTTATGTCTATTGTAAATCACAACTTAGAGAGCTGTCAAGTGTAGAGCAACGATGAGGATGTTGTGGACTGGGCAGATACAGGGTCAAGTCTGTCTGTAAAAACTgacattggtgtgtgtgtttttttattttttaaatgatggcTTGTCCACTTTCTCTCACGTCCACTTTATAGAGCACCGTTAGAGTCATTGGTAGGTGTATAACTCCTCGATAAAGGTAGCACTTTGTGGTATTTGTTGTCCAGCAGCCAAATAGTTTGTCAGAAGCAAAAACTTCAATGTTGGTATATAGGCTACAAAGAGTTACATGAGTTGAAGTCTATAGTTTACAGTGTTgctattagatttttttttttttttacctccatTGAGTTGGTGTTTTAAACAAAAAGCCACTTAATCCCACTTCTGTTGTCGCTATGTAAAACAGTCAACCTTTTACACTTCGAAATCACTGTAAGaaccttgttttttttgtgtaaacACACTTCTTGTTGCATTGAAGATGACATTAAAGGCTACTTGTTGTGAATGTTACACACTGTGGAATAAAGTGATGTGCCAATACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1996116 lncRNA upstream 1819 45675440 ~ 45675842 (+) True G1743070
TU1996115 lncRNA upstream 2314 45675106 ~ 45675347 (+) True G1743069
TU1996114 lncRNA upstream 2815 45674641 ~ 45674846 (+) True G1743068
TU1996106 lncRNA upstream 12446 45664994 ~ 45665215 (+) True G1743060
TU1996080 lncRNA upstream 44285 45633138 ~ 45633376 (+) True G1743039
TU1996123 lncRNA downstream 17127 45703176 ~ 45706460 (+) True G1743076
TU1996134 lncRNA downstream 26654 45712703 ~ 45712910 (+) True G1743087
TU1996136 lncRNA downstream 29862 45715911 ~ 45716144 (+) True G1743089
TU1996137 lncRNA downstream 31924 45717973 ~ 45718186 (+) True G1743090
TU1996138 lncRNA downstream 32338 45718387 ~ 45718742 (+) True G1743091
XM_021577982.2 mRNA upstream 29412 45642861 ~ 45648249 (+) True si:dkey-19b23.7
XM_036957971.1 mRNA upstream 111919 45544516 ~ 45565742 (+) False si:dkey-38p12.3
XM_036957965.1 mRNA upstream 160428 45485247 ~ 45517233 (+) False LOC110500870
XM_021577986.2 mRNA downstream 2401 45688450 ~ 45702662 (+) True LOC110500573
XM_021577990.2 mRNA downstream 58561 45744610 ~ 45755368 (+) False LOC110500577
XM_021577988.2 mRNA downstream 58568 45744617 ~ 45755368 (+) False LOC110500577
XM_021577989.2 mRNA downstream 58579 45744628 ~ 45755368 (+) False LOC110500577
XM_021577991.2 mRNA downstream 58579 45744628 ~ 45755368 (+) True LOC110500577
TU1996084 other upstream 37919 45639296 ~ 45639742 (+) True G1743043
TU1995371 other upstream 122072 45549117 ~ 45555589 (+) True si:dkey-38p12.3
TU1995333 other upstream 183709 45485272 ~ 45493952 (+) True LOC110500870
TU1995329 other upstream 228974 45444527 ~ 45448687 (+) True fcer1g
TU1994553 other upstream 1205097 44461382 ~ 44472564 (+) False LOC110500529
TU1996124 other downstream 21093 45707142 ~ 45709950 (+) True G1743077
TU1997842 other downstream 1477855 47163904 ~ 47167654 (+) True G1744645
TU1999487 other downstream 2408718 48094767 ~ 48095119 (+) True G1746210
TU1999753 other downstream 2639051 48325100 ~ 48363926 (+) True G1746471
TU2000589 other downstream 3291277 48977326 ~ 48977758 (+) True G1747255

Expression Profile