RNA id: TCONS_00050686



Basic Information


Item Value
RNA id TCONS_00050686
length 856
RNA type mRNA
GC content 0.39
exon number 4
gene id XLOC_025811
representative True

Chromosome Information


Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 57820913 ~ 57823547 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


TTAAACTATTCAACAATGGAATCCACCAGACCTTTATATATTTGCCTTTCTGAAGACCATCAGGAATTTCCAAAATTTGGAGACTGGGATCATGGGATTTTCGTTACGAATCTGAATCCACATTTGACCGACAGCGAGCTCCGCTGCCACTTTGAGAAATTTGGCACAGTTACAGAATGTGTTATAAGGACAGACAGCTCTTCAGGATGGCCAAAGGGTTTGGGCTTTGTGAGATATTCGTCTTCTGGAGAAGCGGCAGCAGCACATGACGCCGGACCTCATTGTGTCGGAGGATTTCAGATACTCCTCAGAAAGGTCATCACACCTAAAaaggTGTATGGCAGCCAGTTGAACGCTCTTCAGGGCCAGTCCTTTCgtgcagatgtgtgtgtgaaCTAGAAGTGGAAAGCCTGAAGAGATTTGCACTCATCTTACATCACCCTGTTCAATGAAATCTGAACTAAATGTGACCTTTCTGTGTGATGCTCCGTCCTTCCATTATCACATTATCAATCTTGTTTTAAAGTCTGTGAAACGCCTGTATTATAagaataactttttatatatatatactttttatactGTGTCTgaaatgtttattacatttatCTTAACTAACACTTTTTTATTGAGTTTGTAATTGTGCTTCGGTGAAAGAAATCCTTTATTTTTAAGGATGTTTCCCCTGAAACTGTGAACATTGACTTAACTCAATCTTTAAATAAAGATCCTCTCTTTCTGTTATCTTTTTGTAGTCCGTTAAGCTGTTTATTACACCCAGTCTCTGAGTAACATAATTGGGCAATCTATCCAGTGATCCCAAACACATTTGGTTCCTATTTTGTTATAATTTGGG

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000168101

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00052387 lncRNA upstream 52247 57766624 ~ 57768666 (+) True XLOC_025809
TCONS_00052814 lncRNA upstream 179823 57636374 ~ 57641090 (+) False XLOC_025808
TCONS_00052386 lncRNA upstream 180326 57636416 ~ 57640587 (+) True XLOC_025808
TCONS_00052812 lncRNA upstream 384609 57434261 ~ 57436304 (+) False XLOC_025807
TCONS_00052815 lncRNA downstream 157711 57981258 ~ 57986847 (+) True XLOC_025814
TCONS_00052816 lncRNA downstream 170831 57994378 ~ 57995547 (+) True XLOC_025816
TCONS_00052388 lncRNA downstream 313395 58136942 ~ 58137294 (+) True XLOC_025820
TCONS_00050700 lncRNA downstream 350530 58174077 ~ 58180383 (+) True XLOC_025821
TCONS_00052817 lncRNA downstream 364440 58187987 ~ 58192699 (+) True XLOC_025822
TCONS_00050685 mRNA upstream 4036 57797252 ~ 57816877 (+) True XLOC_025810
TCONS_00050683 mRNA upstream 4343 57779673 ~ 57816570 (+) False XLOC_025810
TCONS_00050684 mRNA upstream 25236 57788761 ~ 57795677 (+) False XLOC_025810
TCONS_00050681 mRNA upstream 497417 57268363 ~ 57323496 (+) True XLOC_025805
TCONS_00050680 mRNA upstream 563838 57234093 ~ 57257075 (+) True XLOC_025804
TCONS_00050687 mRNA downstream 2391 57825938 ~ 57830023 (+) False XLOC_025812
TCONS_00050689 mRNA downstream 124830 57948377 ~ 57979190 (+) True XLOC_025813
TCONS_00050690 mRNA downstream 167527 57991074 ~ 57991985 (+) True XLOC_025815
TCONS_00050691 mRNA downstream 174433 57997980 ~ 58006138 (+) False XLOC_025817
TCONS_00050693 mRNA downstream 174449 57997996 ~ 58006133 (+) True XLOC_025817
TCONS_00050682 other upstream 181465 57636374 ~ 57639448 (+) False XLOC_025808
TCONS_00050664 other upstream 2337266 55483513 ~ 55483647 (+) True XLOC_025789
TCONS_00050662 other upstream 2521755 55299043 ~ 55299158 (+) True XLOC_025787
TCONS_00050635 other upstream 3753274 54067523 ~ 54067639 (+) True XLOC_025764
TCONS_00050620 other upstream 4991907 52828912 ~ 52829006 (+) True XLOC_025751
TCONS_00050688 other downstream 2392 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050692 other downstream 174443 57997990 ~ 57998559 (+) False XLOC_025817
TCONS_00050699 other downstream 344976 58168523 ~ 58170414 (+) False XLOC_025821
TCONS_00050717 other downstream 878773 58702320 ~ 58710755 (+) True XLOC_025845

Expression Profile


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