RNA id: TCONS_00050687



Basic Information


Item Value
RNA id TCONS_00050687
length 495
RNA type mRNA
GC content 0.45
exon number 5
gene id XLOC_025812
representative False

Chromosome Information


Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 57825938 ~ 57830023 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


GAGAAGCAGCGTCCTGTCCGAAGTGCCATTCAGCACACGAAGAAGCGGACAGCCAGTGACTCACAGGAGCCTTCATGACGACAACCTGACAGAATGGCGACCGCGGGAAATGAAGTGGCGTTTAAAAAGgaAACTGTTGCTAAGCTGTTGAGTCGCTCTTTCAGAGAGGACAAAACCAGAGTCAGTAGTGATGCTGTCGTCCTCGTGGCGGAGATGTTGAAAGTGTTTGTTGAAGAAGCGACACGGCGAGCGATCAAACAGGCCAGCAGCGAGGACTGTGACACAGTTACTATTGAGCACTTTGAAAAGATCCTGCCGCAGTTGCTTCTTGACTTTTAGTTAAGCAGAGGAGCCAGCAGATGGAGACACAAACCAGCTCTCTTCAACTGAACATCCTTGTCTTCTCTTCTTTTGGAAATGTAGCAATCGTATCAGTGTCTTTAATGGTGTGCATGTGTTAAATATatgactaataaaaaaaaaatattattatta

Function


GO:

id name namespace
GO:0031297 replication fork processing biological_process
GO:0000712 resolution of meiotic recombination intermediates biological_process
GO:0006281 DNA repair biological_process
GO:0051382 kinetochore assembly biological_process
GO:0071821 FANCM-MHF complex cellular_component
GO:0043240 Fanconi anaemia nuclear complex cellular_component
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
ko03460 Fanconi anemia pathway
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-110411-78 Predicted to enable DNA binding activity and protein heterodimerization activity. Predicted to be involved in replication fork processing and resolution of meiotic recombination intermediates. Predicted to act upstream of or within DNA repair and kinetochore assembly. Predicted to be part of FANCM-MHF complex and Fanconi anaemia nuclear complex. Is expressed in liver and biliary system and pancreatic system. Orthologous to human CENPX (centromere protein X).

Ensembl:

ensembl_id ENSDART00000128815

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00052387 lncRNA upstream 57272 57766624 ~ 57768666 (+) True XLOC_025809
TCONS_00052814 lncRNA upstream 184848 57636374 ~ 57641090 (+) False XLOC_025808
TCONS_00052386 lncRNA upstream 185351 57636416 ~ 57640587 (+) True XLOC_025808
TCONS_00052812 lncRNA upstream 389634 57434261 ~ 57436304 (+) False XLOC_025807
TCONS_00052815 lncRNA downstream 151235 57981258 ~ 57986847 (+) True XLOC_025814
TCONS_00052816 lncRNA downstream 164355 57994378 ~ 57995547 (+) True XLOC_025816
TCONS_00052388 lncRNA downstream 306919 58136942 ~ 58137294 (+) True XLOC_025820
TCONS_00050700 lncRNA downstream 344054 58174077 ~ 58180383 (+) True XLOC_025821
TCONS_00052817 lncRNA downstream 357964 58187987 ~ 58192699 (+) True XLOC_025822
TCONS_00050686 mRNA upstream 2391 57820913 ~ 57823547 (+) True XLOC_025811
TCONS_00050685 mRNA upstream 9061 57797252 ~ 57816877 (+) True XLOC_025810
TCONS_00050683 mRNA upstream 9368 57779673 ~ 57816570 (+) False XLOC_025810
TCONS_00050684 mRNA upstream 30261 57788761 ~ 57795677 (+) False XLOC_025810
TCONS_00050681 mRNA upstream 502442 57268363 ~ 57323496 (+) True XLOC_025805
TCONS_00050689 mRNA downstream 118354 57948377 ~ 57979190 (+) True XLOC_025813
TCONS_00050690 mRNA downstream 161051 57991074 ~ 57991985 (+) True XLOC_025815
TCONS_00050691 mRNA downstream 167957 57997980 ~ 58006138 (+) False XLOC_025817
TCONS_00050693 mRNA downstream 167973 57997996 ~ 58006133 (+) True XLOC_025817
TCONS_00050694 mRNA downstream 262189 58092212 ~ 58097473 (+) True XLOC_025818
TCONS_00050682 other upstream 186490 57636374 ~ 57639448 (+) False XLOC_025808
TCONS_00050664 other upstream 2342291 55483513 ~ 55483647 (+) True XLOC_025789
TCONS_00050662 other upstream 2526780 55299043 ~ 55299158 (+) True XLOC_025787
TCONS_00050635 other upstream 3758299 54067523 ~ 54067639 (+) True XLOC_025764
TCONS_00050620 other upstream 4996932 52828912 ~ 52829006 (+) True XLOC_025751
TCONS_00050692 other downstream 167967 57997990 ~ 57998559 (+) False XLOC_025817
TCONS_00050699 other downstream 338500 58168523 ~ 58170414 (+) False XLOC_025821
TCONS_00050717 other downstream 872297 58702320 ~ 58710755 (+) True XLOC_025845

Expression Profile


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