Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00050688 |
| length | 468 |
| RNA type | nonsense_mediated_decay |
| GC content | 0.50 |
| exon number | 5 |
| gene id | XLOC_025812 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 57825938 ~ 57830023 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0031297 | replication fork processing | biological_process |
| GO:0000712 | resolution of meiotic recombination intermediates | biological_process |
| GO:0006281 | DNA repair | biological_process |
| GO:0051382 | kinetochore assembly | biological_process |
| GO:0071821 | FANCM-MHF complex | cellular_component |
| GO:0043240 | Fanconi anaemia nuclear complex | cellular_component |
| GO:0046982 | protein heterodimerization activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-110411-78 | Predicted to enable DNA binding activity and protein heterodimerization activity. Predicted to be involved in replication fork processing and resolution of meiotic recombination intermediates. Predicted to act upstream of or within DNA repair and kinetochore assembly. Predicted to be part of FANCM-MHF complex and Fanconi anaemia nuclear complex. Is expressed in liver and biliary system and pancreatic system. Orthologous to human CENPX (centromere protein X). |
| ensembl_id | ENSDART00000148693 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00052387 | lncRNA | upstream | 57273 | 57766624 ~ 57768666 (+) | True | XLOC_025809 |
| TCONS_00052814 | lncRNA | upstream | 184849 | 57636374 ~ 57641090 (+) | False | XLOC_025808 |
| TCONS_00052386 | lncRNA | upstream | 185352 | 57636416 ~ 57640587 (+) | True | XLOC_025808 |
| TCONS_00052811 | lncRNA | upstream | 344943 | 57426160 ~ 57480996 (+) | True | XLOC_025806 |
| TCONS_00052812 | lncRNA | upstream | 389635 | 57434261 ~ 57436304 (+) | False | XLOC_025807 |
| TCONS_00052815 | lncRNA | downstream | 151339 | 57981258 ~ 57986847 (+) | True | XLOC_025814 |
| TCONS_00052816 | lncRNA | downstream | 164459 | 57994378 ~ 57995547 (+) | True | XLOC_025816 |
| TCONS_00052388 | lncRNA | downstream | 307023 | 58136942 ~ 58137294 (+) | True | XLOC_025820 |
| TCONS_00050700 | lncRNA | downstream | 344158 | 58174077 ~ 58180383 (+) | True | XLOC_025821 |
| TCONS_00052817 | lncRNA | downstream | 358068 | 58187987 ~ 58192699 (+) | True | XLOC_025822 |
| TCONS_00050686 | mRNA | upstream | 2392 | 57820913 ~ 57823547 (+) | True | XLOC_025811 |
| TCONS_00050685 | mRNA | upstream | 9062 | 57797252 ~ 57816877 (+) | True | XLOC_025810 |
| TCONS_00050683 | mRNA | upstream | 9369 | 57779673 ~ 57816570 (+) | False | XLOC_025810 |
| TCONS_00050684 | mRNA | upstream | 30262 | 57788761 ~ 57795677 (+) | False | XLOC_025810 |
| TCONS_00050681 | mRNA | upstream | 502443 | 57268363 ~ 57323496 (+) | True | XLOC_025805 |
| TCONS_00050689 | mRNA | downstream | 118458 | 57948377 ~ 57979190 (+) | True | XLOC_025813 |
| TCONS_00050690 | mRNA | downstream | 161155 | 57991074 ~ 57991985 (+) | True | XLOC_025815 |
| TCONS_00050691 | mRNA | downstream | 168061 | 57997980 ~ 58006138 (+) | False | XLOC_025817 |
| TCONS_00050693 | mRNA | downstream | 168077 | 57997996 ~ 58006133 (+) | True | XLOC_025817 |
| TCONS_00050694 | mRNA | downstream | 262293 | 58092212 ~ 58097473 (+) | True | XLOC_025818 |
| TCONS_00050682 | other | upstream | 186491 | 57636374 ~ 57639448 (+) | False | XLOC_025808 |
| TCONS_00050664 | other | upstream | 2342292 | 55483513 ~ 55483647 (+) | True | XLOC_025789 |
| TCONS_00050662 | other | upstream | 2526781 | 55299043 ~ 55299158 (+) | True | XLOC_025787 |
| TCONS_00050635 | other | upstream | 3758300 | 54067523 ~ 54067639 (+) | True | XLOC_025764 |
| TCONS_00050620 | other | upstream | 4996933 | 52828912 ~ 52829006 (+) | True | XLOC_025751 |
| TCONS_00050692 | other | downstream | 168071 | 57997990 ~ 57998559 (+) | False | XLOC_025817 |
| TCONS_00050699 | other | downstream | 338604 | 58168523 ~ 58170414 (+) | False | XLOC_025821 |
| TCONS_00050717 | other | downstream | 872401 | 58702320 ~ 58710755 (+) | True | XLOC_025845 |
