RNA id: XM_021578009.2


Basic Information

Item Value
RNA id XM_021578009.2
length 1954
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC110500591
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 46016422 ~ 46020567 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTAACAAGTGATGACCCTATGTGGGAGTTGCCTCTCTCTTTGATGACATCACTGTATTTTAAAAGATTAGTCATATGTTAATAACAGTATGTTTGGCAAGCTGTCAAGTGAGATCCCTACCTCCCACGCACTTCCCCCTCTAAAAAATCAAAACACACTGTAGCCTCATAGTCTCATCATTCCGATAGTTCATTCTCGTTGAATGAAACAGCACCCAAAGAGAAACAAAAATGTGTTCAGAACATGAGTGCGGAATTTGTTACAGAAGCTACAACACGGATCGTCGGTGTCCTCGTGAGTTACAGTGTAAGCACATCTTTTGTGAGAGCTGTATCGTGACTCTTTCTCGACCCTCGGTACGTGAAGTGGAATCCAGGAAGGAATGTTCGCGGCAGGACAAGACAATTGTTTGCCCACTGTGCCGGTACACAACGTCGGTCTCGGGTAAAGTGAGGGCAGCGCTTCGGGTAGACGAAGGTATTCTTGAGCGCATGATGTCATCTGGCGTACTAAGCATGACAGACGACGAGGAGGATCGAGAAGATGATGAGACTTCTCATGAGAACTCAGCCGAGGAAAGGGACTCCTCTTCGGGTTCCGTAGTTGGAAGGTTCCGCCGTTCGCTGAGGCGCGTCTGGGGCAAATTAACTCGGAATGATGACCAACGGAGAGCGGATTGTATGACTGATGAGGACCTACGAGACCTTGCCATGATGTCATGCTACATCATTTGATGAGGACTCCGTTGGAAAAAAGTAATCAGCTGCTGCACCTGATTGATCAGAGAGAGGGCGTTGCTGTCCACGAGCCAACGCTACAGTATTTAGAATGGAGAAGACTGGCGGGTCCAGTTGGAAGTTGGAGCAAGCAGGAATATAGCCTCTTCGCACCGGGAGACCTGTACACGTTGATCTCCCGTTGCTGAAGTTGACATCCCTTACCCCGTATAACATATTTACCAGCCCTCTGGTATATTTACGAGAAACTTTACCTGTCACTGAAGGCAATTCTATAATCCTGTTTACCATTTGGTACGGGCTATACAATGTGTGAACTATGGTAAAAATGGTATAAATATACGTTTTCTGAAGCTCACTCCCTAGTCCCCATACAGCCTACTAGTTTTCCGTGATTTTTCCATGTGATCCTAGATGGCAGCACACCATTAGGAAGATAGGATGTGAATTTGGTTAATTTGAGGAACGTTGgatataaatgtttgtttttttcacacATTGTAAAAATACATTTGGTCAATTTGTGGAAAGTTGGATATAAAAGTagtttttttctccacacatgtAAGAATAAACTAGCAGGAATATAGCtttatttacacaggcagcccaatttggagcttttttttttactaattggtcttttaaccaatcacatcagatcttttccaGAGTCAAAATTAGTCAAAATAGCCATTATTGGGTaaacaaaatatcagaattgggctgcctgtgtaaatgcagcctatgTATTCTATAATAGCCAACTAGGCCTAAGTGTCGATTTTTTCTCACTTGCATGTCATAATTTGGTGGTGACCAAACATAAACACAATGGTAAAACAGAATTGTAAAGGCTGAAAATGACAAGACCATATAGGCTTTTTCTCTGAACCCATTTGGCTACCAAATGAAATGTTTTTGTATGAAATTGTCTTTGGTGCTTTGAAGTAgcctattttatttaacctttatttaacttggcaagtcagttaagaacaaattcttatttacaatgatggcctaccccggccaaactctatGACTTTCCATTTCCAAAGATTAGAATAAGTATTTAATATTGTTGGTGCTAAGTTCACAAGCACACACTTAATATAATTCAATATGTAATTCAGTGTATTTACTTCATTCACTTTCATTGATTGTGCACTTTTTTTAGGCCTATGTTTTGTTGTAATAAAAGCATATCGGCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1996229 lncRNA upstream 48639 45922506 ~ 45967783 (+) True G1743171
TU1996274 lncRNA upstream 86300 45928826 ~ 45930122 (+) False G1743202
TU1996268 lncRNA upstream 86300 45928903 ~ 45930122 (+) False G1743202
TU1996261 lncRNA upstream 86567 45928826 ~ 45929855 (+) False G1743202
TU1996265 lncRNA upstream 86567 45928826 ~ 45929855 (+) False G1743202
TU1996756 lncRNA downstream 148852 46169419 ~ 46171765 (+) True LOC110500595
TU1996784 lncRNA downstream 162733 46183300 ~ 46183714 (+) True G1743648
TU1996790 lncRNA downstream 170648 46191215 ~ 46192309 (+) True G1743654
TU1996798 lncRNA downstream 177932 46198499 ~ 46198707 (+) True G1743660
TU1996761 lncRNA downstream 186447 46207014 ~ 46210406 (+) True LOC110500598
XM_021578003.2 mRNA upstream 71552 45942157 ~ 45944870 (+) True LOC110500588
XM_036957984.1 mRNA upstream 127765 45869887 ~ 45888657 (+) False LOC110500584
XM_036957985.1 mRNA upstream 127765 45869887 ~ 45888657 (+) False LOC110500584
XM_036957986.1 mRNA upstream 127765 45869887 ~ 45888657 (+) True LOC110500584
XM_021577999.2 mRNA upstream 166415 45848186 ~ 45850007 (+) True cnpy4
XM_021578013.2 mRNA downstream 130874 46151441 ~ 46172393 (+) False LOC110500595
XM_021578034.2 mRNA downstream 181264 46201831 ~ 46207380 (+) False LOC110500598
XM_021578021.2 mRNA downstream 181271 46201838 ~ 46210557 (+) False LOC110500598
XM_036957998.1 mRNA downstream 196050 46216617 ~ 46266922 (+) False LOC110500597
XM_036957995.1 mRNA downstream 196092 46216659 ~ 46266922 (+) False LOC110500597
TU1996124 other upstream 306472 45707142 ~ 45709950 (+) True G1743077
TU1996084 other upstream 376680 45639296 ~ 45639742 (+) True G1743043
TU1995371 other upstream 460833 45549117 ~ 45555589 (+) True si:dkey-38p12.3
TU1995333 other upstream 522470 45485272 ~ 45493952 (+) True LOC110500870
TU1995329 other upstream 567735 45444527 ~ 45448687 (+) True fcer1g
TU1997842 other downstream 1143337 47163904 ~ 47167654 (+) True G1744645
TU1999487 other downstream 2074200 48094767 ~ 48095119 (+) True G1746210
TU1999753 other downstream 2304533 48325100 ~ 48363926 (+) True G1746471
TU2000589 other downstream 2956759 48977326 ~ 48977758 (+) True G1747255
TU2001181 other downstream 3425272 49445839 ~ 49446626 (+) True G1747814

Expression Profile