RNA id: XM_021578021.2


Basic Information

Item Value
RNA id XM_021578021.2
length 5334
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC110500598
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 46201831 ~ 46210557 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGTGCTTGTGTTCAAGTGTAGGCTATCCTTCATGTGTAGCCCAAACAAACAAGTAAACAAACATGTCATTACGGTAATTGTTGTAATTTACCTGCATTATCTCGCAAGTAGACGTCAGTGTAATTGACCAATTTGATATCCCTAGCTAGGCGACATTGACGCTGCAGCAACCAAAATTGGATTAAAACTGAAAAAGTGAATCATTTTCTAGACATAATTAGTTAGCCTACTAACTAGCGTACACATGTTATTTGCCTCAGCGTAATTTGACAAAGCAATAGTTTCTACATTTGATCGTGTATAAAGTTGCGGTGCAAGTAGGCAATAAGATGTAACATTGTTTGTACGTGATCTAGCCTCATTGTCGCTTCACTGAAATATCTTTCGTTTGTAAATGAGTATGAAGACGAGACCGAATGTTTTGGGATTTTAAGAGAACCCTGACATGTCTGGTCCTACCTGGCCGCCTCCAAAGACTCTGGGTAGCCCAGTGAGACCGGTCCCTCGACTGTCCCAATCTGGACCAGCCGTGTACAGACAGCTGCCCATGAAGGTCTCCTCGGACACCCGGCCCAAATATGTGGTCCATGaccagaacagaggaggaggcgGAATGGCCACTAGGTACTTGGCTACAAGATCCACAGCTGGGCCCATGCAGCACCACCACCAAGAGGACCCAGGGTTTCACCCTAAATCTAATGACCACTACTACCAACCACCTCCCCACCAGCTCAAAGAAGACCAATCCTTGAACCCTCACATGGACCGCTACCAGCTGATGCACCACTCCAACATCGATGCAGAGATTGACTCGCTCACCTGCATGCTGGCCGATCTGGACAGCCATCCACAAAACAGCGCACAGCTGTACGACAACGTGCCTTATGACAAACACATCTCAGGGGACTGCTACAAACCCTCAGCCCAGCCAGGAGAACCCTCTCAGGGCATGCAGTCCATGGGATTCTCCCCTCACCCCCAGTCTCAGTACCCTCCTGCACCCCCATACCCCAGTGATCCCCACCAGGGTCTCCAGTACTTCCCTCAGCCAGACTACACCAACAACCAGGTATCCAAACGCTACCCCCAGCCTGTCCCTGCCCCCTACACTACTGCCTCCACTCCTACTGGCCCGAGGTTCAGTGTCCAGGTCAAAACAGCCCAGCCTGTCACCAACTCCCAGACTGGTAGGCAAGCCGAACAGGCTTACACCCCTCCCCCACACCGCCAGCACGCGTTGTGGCCCCCATCCCAGAATCAGACTGGCCCCCTGGGCTGGTACCCTCCACAACTCGATTCCCAAGCCCAGGAGCTGCACTCTGAGAAGGGTTACAAGGGGAGTGATGCAGGGTCTGGAGGGAGAGCTACCCAGTGCCCCATGTCCAATAGAGGCCCAGAGACTCACCAATCAGGGTCAGGCTCGGCACCAAGCTCCGCCTATCAGCCCAGTAAGCAGGGGACAGCAGCTCTGAGGCCAGAGGAGGAGTTGGACCAGCTCACTAAGGAGTTGGTGTATGACATGAATCATCCCCCTACAGAAGAATACTTTGGTTGCTGTGCACGTTGCGGTGACAACGTCCTTGGTGACGGCAGTGGCTGTATTGCCATGGAGCAGGTGTTCCACGTGGAGTGCTTCACTTGCGTCACCTGCCACACTCGTCTCCGGGGGCAACCGTTCTACGCCCTGGACAAGCAGAGCTACTGCGAGAGCTGTTACATTaGTACCCTAGAGCGCTGCTCCAAGTGCTCCAAGCCCATCCTGGACCGTATCCTACGGGCCATGGGCAAGGCCTACCACCCGCGCTGCTTCAACTGTGTTGTGTGTGGCTGCTGCCTGGATGGTGTGCCCTTCACCGTGGACGCCACCTACCAGATCCACTGTATAGACGACTTCCACAGGAAGTTTGCCCCACGCTGCTCAGTGTGTGGCCAGGCCATCATGCCCGAGCCTGGCCAAGAGGAGACGGTCAGGATAGTGGCGCTGGACCGCAGCTTCCACGTCAACTGCTATGTGTGTGAGGAGTGTGGTCTGCTCCTGTCGTCTGAGGGTGAGGGGCGAGGCTGTTACCCCTTGGACGGTCACATCCTGTGTAAGGGCTGCAGCGCCCGGCGCATCCAGGACCTCTCTGCTAAAATATCCACTGACTGCTAACCAACTATGGAAAATCACATCTTACCTTTTAACCTATGACCCCCTCAACCCTTTCATTACTTTCACCTGCTTTACGTAGAAGTTGCCGTAAGGACCAGATCTGGAATCAGTTCTACCCTTCTTTGACTCATAATCATAACCACATGGGGGAAATGTTAACCTGACTGTGTCAGGGCATCTTCATCCCCCTTCACTTTAATCCTCTCAGCCTTTCTTTATAATTCAGATGCCCAAAGCTGAGGAATCAGTAGTAGTTGGCCTACTATTGAACCTCAATCTGACAGTCTCCAATATGAAGTCATTATTTAATTTCCCTTGACCGGGTTTATTTGTACAGGTTCAAGACAGGGTATTGAAACATGGATTGACAATAAGTTCGACCCCTATTCCCTTCCGTATCCTCTGCTTTACACTATCACCTATCCTCTACATTCTCTACCCCTACTCCCTTTCCACCATAGCCTATCCCCTACCCCTCAGTCCCATAGCagtactgtatagagcccctgaCCTGCAGGCAGCAGGGGCTGCACTACCCCAAACCCTTGACTCCACCATTGCTCATTTCACACACTATCCTGTAGCTGTGTTTGAAAACTCAtactaaccatactatttgtgacGTGAATTGTCTATATACTATGCTTATtagtcatagtatggatatagttagtatgccaaacgTTCCTGTATGTCTTACTAAATGGTATCTTGCACCAAAATAAGAAGTaatccagtaaccgaaaggttgctggattgaatccccgagctgacaatgtaacaatctgtctttctgcccctgaacaaggcaggtaacccatTGTTCCCCTGTAGGcggttattgtaaataagaatttgttcttatctgacttgcctagttaaataaaaagtcaTTACAGCAGTATATTCAGGCGGTATGTTAGCTAGGCTACTTATACATTCGTTGCCTACTTATACATCAAATTTGCCAGTATCTTATCTATAGGCTATCTAAcgacccaacgtttattgacttgattattcccgtcattcttagtttagctaaatggtatagtcgttgGACATTCGGATGCTTTCTTAAATtctctcgtctgagtgtaccagagcgcagaataattaATTTACTagcgctcaacacctgttgaatatggccggtgtcagtaaacgtcggcaaaaaaaacgtacttaaattgttgccagcagcccAGTTAGTCActaacgctctggataacatgaacacTGCATAATCAgatctgctagggcgagtaaatgGGCAGTGGTTTCATTTGTCTGGAAGTAGCCAACGTTAGTTTGGGGTCAGAACGCTGAAATAAACTTTACTCCTCGTCccgagcgtccagtgtgcgctcagaGAGCggaatgctctgaatttacaagcgtagtctggcactccagattgagtTTAATTAAGAACACACCCGAAGTCGTAAAATGTCTTATCTAGTAATTTATGCAGACTAGCAAGTAAGAGGTTGTATATTAACATTCACAACTTCCAGTAGACAGGCGAAGCGCTGGTACCCTCAACTGTAAGGATCCCATTTCGTTCACAGTATACTGAAATTAACTAATCGTTTGtagtactcattaagtatgtactatacagtatgttagtatgggtatttcCAACACAGATCATGTCTCACACACACTATCCTGCATATGTtgcacactgtctcacacactaTCCTACCAGACACAGGTGGGACATGAAAGGAGCTCTATGGAGAAAATGATTGATATATATTGACGATGTGGTGGATGATAAGTATGAACATTAGGTGATATTGAGGAAGAGTAGGATAATGATGAGGAATACAATGTCTTCCTTGCTGTGGGGTAACTGACAAGTCCAGATAATGGAACATATATTTTTGTATACCACTAAAGTCAATAACCGTCCTGAACTGCCTCATAAACAAAGTACACACATGCAAAGTATTTCTGTGACTGAGTTTATATTGCAGGTGGTTTTGGTTGTGGAGTGAATGTGTTTGGAGACCTTTCATTGGAGACCAAGTGGGTGTAGTCAGTGTGTTGTGCAGTGAATAAGAGTTTTTAGAAAGTAGACGGGAAGAAAGATTGGTTAGGGAGAAAATGATCAGTAAAGTCGATGCTTTGATCTCATTGGATGTTAataacatttgtatttatttaaatgcAACCTTTTTTAAAACTAGGCAaatccgttaagaacaaattcttatttacaatgactgcctaccccagccaaaccggacaacgctgggccaattgtgagctgccctatgggactcccaatcatggccggatgtgatacagactggaatcaaaccagggactgtagtgatgcctcatgcagttccttagaccgctgcgccactcgggagcccttatGCACTGTAGCCCGTCATGTAATGGTATTTGGCACCACATGTCAGAATATAACATCAATATTGTATTCCCCAGGACAGCGTTTTGTATAATGATAATGGTACTGCATTTCAGAGAATGTTACTTGTATACCAGTCCAAACCCCCTCTTTTAAAATGTGAATGTGCTTTTCAAATGTTTTTCCTTTTTTCATATTTGGGTTGATTTGATACTTTACAATGAAGAGGAATAAGGTGCAATGAAGTATGCTTGCCATTGTCTTAGTTTTTCTCAGTCtctttggtgcatttttcacatcatccctaacatgtgcaaaataataagtgcatttctcagaacaatttgtacaaactgcaatatatgtttctaaagctagtcagtcactaaaaatccttaatacatctctcaaaagtaaatattcatgCCAATGATCATCAGAAAGTTGTCATTGTTCACGAACAAGGTCGTCAAAATGTTTAGGCATGTTGTCAATGTAACTGTACTTTGACAGTATTACCTGATGTAAACTTTGGCTATAGTTtggatgacagttactgtattgaaaatgcacaaggctgcacttctatagcatatcaatttcaacagtactatttacatattactgtatgtgggttaTTGATTGAAAGAGACTGGACAACCCAATGGGCACAAAGGAAAAATAACTAAGTTAAaaagaaacacaggaaaccacccctaaggcacaactttgcccgcagttgtgctgtctctacacatccagacgttcctgtctgtcggcccacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1996798 lncRNA upstream 3131 46198499 ~ 46198707 (+) True G1743660
TU1996790 lncRNA upstream 9529 46191215 ~ 46192309 (+) True G1743654
TU1996784 lncRNA upstream 18124 46183300 ~ 46183714 (+) True G1743648
TU1996756 lncRNA upstream 30073 46169419 ~ 46171765 (+) True LOC110500595
TU1996337 lncRNA upstream 181305 46020053 ~ 46020533 (+) True LOC110500591
TU1996946 lncRNA downstream 93859 46304416 ~ 46304977 (+) True G1743799
TU1997086 lncRNA downstream 271529 46482086 ~ 46563803 (+) True G1743935
TU1997338 lncRNA downstream 363772 46574329 ~ 46574637 (+) True G1744182
TU1997384 lncRNA downstream 410252 46620809 ~ 46621725 (+) True G1744226
TU1997509 lncRNA downstream 484136 46694693 ~ 46694907 (+) True G1744346
XM_021578013.2 mRNA upstream 29445 46151441 ~ 46172393 (+) False LOC110500595
XM_021578009.2 mRNA upstream 181271 46016422 ~ 46020567 (+) False LOC110500591
XM_021578003.2 mRNA upstream 256968 45942157 ~ 45944870 (+) True LOC110500588
XM_036957985.1 mRNA upstream 313181 45869887 ~ 45888657 (+) False LOC110500584
XM_036957998.1 mRNA downstream 6060 46216617 ~ 46266922 (+) False LOC110500597
XM_036957995.1 mRNA downstream 6102 46216659 ~ 46266922 (+) False LOC110500597
XM_036957996.1 mRNA downstream 6102 46216659 ~ 46266922 (+) False LOC110500597
XM_036958008.1 mRNA downstream 7992 46218549 ~ 46222191 (+) False LOC118936379
XM_036958007.1 mRNA downstream 8036 46218593 ~ 46222191 (+) True LOC118936379
TU1996124 other upstream 491888 45707142 ~ 45709950 (+) True G1743077
TU1996084 other upstream 562096 45639296 ~ 45639742 (+) True G1743043
TU1995371 other upstream 646249 45549117 ~ 45555589 (+) True si:dkey-38p12.3
TU1995333 other upstream 707886 45485272 ~ 45493952 (+) True LOC110500870
TU1995329 other upstream 753151 45444527 ~ 45448687 (+) True fcer1g
TU1997842 other downstream 953347 47163904 ~ 47167654 (+) True G1744645
TU1999487 other downstream 1884210 48094767 ~ 48095119 (+) True G1746210
TU1999753 other downstream 2114543 48325100 ~ 48363926 (+) True G1746471
TU2000589 other downstream 2766769 48977326 ~ 48977758 (+) True G1747255
TU2001181 other downstream 3235282 49445839 ~ 49446626 (+) True G1747814

Expression Profile