RNA id: XM_036957998.1


Basic Information

Item Value
RNA id XM_036957998.1
length 3435
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC110500597
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 46216617 ~ 46266922 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATCAAGCtttaattatttgaatcagctgtgtattgCTAGGGCAAAAAGAAAAACATGCACCCAGGGCAACCCTGAATCAGGCCACGCACATTTCAAGTTTCTTTCCTGAGAATACAGTTCTTTCTGAATAATTATTCAAGAACCCTGACATGTCTGGTCCTACCTGGCCGACTCCAAAGACTCCTGGTAGTCCGGAGAGACCCGTCCCCCAGATGTCCGACTCTGAACCAGCCGTGTACAGACAGCCGCCCAAGAAGGTCTCCTCGGACGCCAGGTCCAAGTATGTGGTCCATGaccagaacagaggaggaggaatggccaCTAGGTACTTGGCTACTGGACCCACAGCTGGGCCCATGCAGCACCACCACCAAGAGGACCCAGGGTTTCACCCTAAATCTAATGACCACTACTACCAACCACCTCCCCAAGGTCTCGATGAAGACCAATCCTTGAACCTTCACATGGAACGCTACCAGCTGATGCACTGGGTAACTCCTGAGAAGCTGATTGGACACCACTCCAGCAGTGATGCAGAGATTGACTCACTCGCCTGCATGCTGGCTGATCAGGACAGCCATACACTAAACGGCACACAGCTGTACCACAATGTGCCTTACAACAAATACATCTTGGGGGACCACTACAGACCCTCAGCCCAGCCAGGAGCCCCATCTCAGGGAGAGCCGTTTATGGGTTTCCCACCTCAGTCCACGGACCATTCTACACCCCCGAACCCCAGTGATCCCCACCAGGGTCTCCAGTACTTCCCCCAGCCAGATGACAACGACACCCAGGTCTCCAAATCCTACCCCCAGCCTGTCCCTGCCTCCTACAATACCGCCTCCACCCATACTGGCCCAAGGTTCAGTTTTCAGGTCAAAACAGCCCAAACTGTCACCTACTTCCAGACTGGTAGGCAAGCTGGGCAGGCTTACACCCCTCCCCCACACCGCCAGCATGCATTGTGGTCCCCGCCCGAGAATCAGACTGGCCCCCAGGGCTGGTTCCCTCCCCACCCTGCATCCCAAGTCCAGGAGCTGCACTCTGAGAGGGGTTACAAGGGGCGTGCCGCAGGGTTTGGAGGGAGAGCTAACCAGTGCCCCACATCCAATGGAGTCACAGAAACTCACCAGTCAGGCTCGGCACCAAGCTCCACCTATCAGCCCAGCAAGCAGGGGACAGCAGCTTCGAGGCCAGAGGAAGAGTTGGGCCAGCCCACTAAGAAGTTTGTGTATGACATGAATCATCCCCCGACAGAGGAAGACTTTAGTTGCTGTGCACGTTGCGGCGACAAAGTCCTTGATGACGGCAGCGACTGTATCACCATGGAGCAGGTGTTTCATGTGGATTGTTTCACCTGTGTCACCTGCCAGGCTCATCTCCGGGGGCAACCTTTCTACGCTATTGACAAGCAGAGCCACTGCAGGAGCTGTTACATTaGTGTCCTAGAGCGCTGCTGCATGTGCTCCAAGCCCATCCTGGACCGTGTCCTGTGGTCCATGGGCAATGCCTACCACCCGCGCTGCTTCAACTGTGTTGTGTGTGGCTGCTGCCTGGATGGCGTGCCCTTCACCGTGGACGCCACCTCCCAGATCCACTGTATAGACGACTTCCACAGGAAGTTTGCCCCTCGCTGCTCAGTGTGTGGCCAGGCCATCATTCCCGGACCGGGCCAGGATGAGACTATCAGTATAGTGGCGCTGGACCGCAACTTCCACGTCAACTGCTATGTGTGTGAGGAGTGTGGTCTGCTCCTGTCCTCTGAGGGTGAGGAGCGATGCTGTTACCCCCTGGACGGTCACATCTTGTGTAAGGGCTGCAGCGCCCAGCACATCCTGAACCCCTCAGCCAAAATCTCAACTGACTGCTAACCAACTAGGAAGTCACCTCTGACCTTTAACCGATGACCCCCACTCAACCCTTCCATTACTTTCACCTCCTCTGGGGTAAAAGTTGGCCTAAAAAAACAGATCTGGAATGAACCTTAACAAGGGGAGATGTTAAACTGACTTGAGATCAGTGTCAAAGAACAACTTCATCCCCCTTCACTTTTATCAGCTCATGGCTTATCTTTGGGCATCTGAAGAATAAAGCTGAGGGCtgcactacccccccccctccctgttcAAACCTTTGATTGCACCACTGCTCATCTCACACTATCCTGCATGTTGCACATTgtctcacacacactttcctgCATGTTGcgcaccctcacacacaccatcctgccaGACACAGATATGGGATTGACATTGTGGAGATATTGATGTTGTGGAGGATAAGTAGGAAAATGAGGTGATATTGAGGATGAGGAATACTGTGTCTTCCTGGCTGTGGGGTAACTGACCAGTCCAGGTATTGGAACATATATTTTGTATACCACTAAAGTCAATAACCGTCCTGAACTGCCTCATAAACAAAGTGCACATATGCAAAGTATTTCTGTGACTGAGTTTATATTGCAGGTGTTTTTGGTTGTGGAGTGAATGTGTTTGGAGACCTTTCATTGAAGACCAAGTGGGTGTAGTCAGTGTGTTGTGCAGTGAATTGAGTTTTTAGGAAGATTGATTAGAGCGAacaagatcactgacgtcattgCTTTGATCTCATTGGATGTTACTACGTAACTTAATCTGTCAATATAATTAAATCTTGAACCACATGTCAGAACGTAACACATTTTATTCTGCAGGACAGTGATTTGTAAACACAACTGGTACTGCGTTTCAGCGAATGTTGCTTGTATACCAGTCCAAACCCTATCTTTTAATATGTGAAAGTGCTTTTTAGATATTTTTCCTTTTAACACTTGGGTTGATTTTCTACTTTAATATGAAGATGAATGCGGCGCAGTAAAGTATGCTCTTCTTACTGAGAAAGGGGAATCTCCATGCTTGTCACGTGTAAGCTTAGCATTAGGAGTTTGCTTTGTTGGCCGTGTTTAAGTAACTCTGCGACATTGTAGTTATTCACACATTGTGTTGTAATTTCTCCTTGAGATTCTCCATCCCGCTGTCTTTGTTTTAATGTAGAAACTGCTAGTATGTTTTGAAGCCTCTCTTCTGACTAAAATACCCTTAAAATCAATTATATTGTTTTCTTTGTCCAGAATCATGTGTTTCAGTATTTGATTCTTCTCAGCGTATAGGTCAATGAGCACATTATGGTCCCTGTGTTGAACAGCATTTTTCACTTTAACTGCTATTGTCACTAAGATGTTTGTGATTATGAGGGTAATGGTCATCACTTTAACTGTTTAATTTTATGTTCCACTGCAGAATAATGATAATTGTCTGAGGAATGGACTGGGCAGGCTTGTACAATTTGACTTGCGTATGAAGTAGGTGTGTGAAtaatttgctttttttttttctttaatgcCGGTTTGTAGTATTATCAAAGACAATAAACCATATTTTATTAAACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1996761 lncRNA upstream 6211 46207014 ~ 46210406 (+) True LOC110500598
TU1996798 lncRNA upstream 17910 46198499 ~ 46198707 (+) True G1743660
TU1996790 lncRNA upstream 24308 46191215 ~ 46192309 (+) True G1743654
TU1996784 lncRNA upstream 32903 46183300 ~ 46183714 (+) True G1743648
TU1996756 lncRNA upstream 44852 46169419 ~ 46171765 (+) True LOC110500595
TU1996946 lncRNA downstream 37494 46304416 ~ 46304977 (+) True G1743799
TU1997086 lncRNA downstream 215164 46482086 ~ 46563803 (+) True G1743935
TU1997338 lncRNA downstream 307407 46574329 ~ 46574637 (+) True G1744182
TU1997384 lncRNA downstream 353887 46620809 ~ 46621725 (+) True G1744226
TU1997509 lncRNA downstream 427771 46694693 ~ 46694907 (+) True G1744346
XM_021578021.2 mRNA upstream 6060 46201838 ~ 46210557 (+) False LOC110500598
XM_021578034.2 mRNA upstream 9237 46201831 ~ 46207380 (+) False LOC110500598
XM_021578013.2 mRNA upstream 44224 46151441 ~ 46172393 (+) False LOC110500595
XM_021578009.2 mRNA upstream 196050 46016422 ~ 46020567 (+) False LOC110500591
XM_021578003.2 mRNA upstream 271747 45942157 ~ 45944870 (+) True LOC110500588
XM_036958011.1 mRNA downstream 767180 47034102 ~ 47113062 (+) False LOC110500876
XM_036958012.1 mRNA downstream 771420 47038342 ~ 47113062 (+) False LOC110500876
XM_036958013.1 mRNA downstream 771420 47038342 ~ 47113062 (+) False LOC110500876
XM_036958010.1 mRNA downstream 771421 47038343 ~ 47113062 (+) False LOC110500876
XM_036958014.1 mRNA downstream 771421 47038343 ~ 47113062 (+) False LOC110500876
TU1996124 other upstream 506667 45707142 ~ 45709950 (+) True G1743077
TU1996084 other upstream 576875 45639296 ~ 45639742 (+) True G1743043
TU1995371 other upstream 661028 45549117 ~ 45555589 (+) True si:dkey-38p12.3
TU1995333 other upstream 722665 45485272 ~ 45493952 (+) True LOC110500870
TU1995329 other upstream 767930 45444527 ~ 45448687 (+) True fcer1g
TU1997842 other downstream 896982 47163904 ~ 47167654 (+) True G1744645
TU1999487 other downstream 1827845 48094767 ~ 48095119 (+) True G1746210
TU1999753 other downstream 2058178 48325100 ~ 48363926 (+) True G1746471
TU2000589 other downstream 2710404 48977326 ~ 48977758 (+) True G1747255
TU2001181 other downstream 3178917 49445839 ~ 49446626 (+) True G1747814

Expression Profile