RNA id: TCONS_00052816


Basic Information

Item Value
RNA id TCONS_00052816
length 1118
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id XLOC_025816
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 57994378 ~ 57995547 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttttaacttgttgtccagggtcacattAGGAAcatcatgttttacgcagcggatgtccttccagctgcaacccatcactggcaaacatccatacacacttactcacacatacactatggacaatttagcctacccatttcacctatagcacatgtttttggacttgtgggaaaaaaaacggagcacccggaggaaacccacacgaacatggggagaacatgcaaactccacacagaaacaccagctgagactcgaaccagcgatcttcttgctgtgagaaagAACTGTGCAGCCCATGTCTTTAAAGTTGTCCAGAATAAGTTCTTGGCAACCCATATTACTAATTAgaagttttgatatatttgttcaaagtaggaaatttactaaatgtCTTTTATGGAACACaacatttacttaatattctattgattttggcaaaaaataaaaatcaataattttgacccattTCATGGATTTTAGGTCACTGCCAAAATTAGTGTAatttgtgatccagggtcacaaataTAGATGACCATTTATTCCAATTGTTAAGGTGCTCAAAGAACCTCTCTTTATGCATTTTGTGATACATCTACAAAGGCTTCAATGGGTTGATCAgtgtgtttaataataataataacaacaacgacaatgcatttaatttattttgcactTTATCTACACCAGAGTGCTACTTTAAGCATAATACAGACAAAAACACATTCAACTGAAGCAGTAAAAAAAGCCCTCCACAgcagcaacagtaaatataactaAGACTAAAATACCATCTTAAATAGCATGAAGTGCATTACACAACCTCGGAGCTGCTACAGAGAAAGCTCTTTCtcccatgtttttttatttttttaatctaaaataaaGTAGTTTGTAACTTCATTAAATTGTTACTTACGCTCAAATCACCAATGAAATAGTACTTTTGGATTCAGTGCACATCAGAATTGACAGAACTGTTCACTTAGgtattgtctatatatatatatatatacaccatgtttttttcttttaaaaaaatactgtagttttATTTGTCATGGTGCTTAGCGAGCACTTCCCTTTATACTGTACTTCTCTATCAATCTACTCAGGCCCCA

Function

GO:

id name namespace
GO:0071840 cellular component organization or biogenesis biological_process
GO:0072378 blood coagulation, fibrin clot formation biological_process
GO:0030168 platelet activation biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0030199 collagen fibril organization biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0032501 multicellular organismal process biological_process
GO:0016043 cellular component organization biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0044420 obsolete extracellular matrix component cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0098643 banded collagen fibril cellular_component
GO:0098644 complex of collagen trimers cellular_component
GO:0005576 extracellular region cellular_component
GO:0005577 fibrinogen complex cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005583 fibrillar collagen trimer cellular_component
GO:0005615 extracellular space cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0045239 tricarboxylic acid cycle enzyme complex cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:0044877 protein-containing complex binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko00561 Glycerolipid metabolism
ko03230 Viral genome structure
ko03320 PPAR signaling pathway
ko04979 Cholesterol metabolism
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052815 lncRNA upstream 7531 57981258 ~ 57986847 (+) True XLOC_025814
TCONS_00052387 lncRNA upstream 225712 57766624 ~ 57768666 (+) True XLOC_025809
TCONS_00052814 lncRNA upstream 353288 57636374 ~ 57641090 (+) False XLOC_025808
TCONS_00052386 lncRNA upstream 353791 57636416 ~ 57640587 (+) True XLOC_025808
TCONS_00052812 lncRNA upstream 558074 57434261 ~ 57436304 (+) False XLOC_025807
TCONS_00052388 lncRNA downstream 141395 58136942 ~ 58137294 (+) True XLOC_025820
TCONS_00050700 lncRNA downstream 178530 58174077 ~ 58180383 (+) True XLOC_025821
TCONS_00052817 lncRNA downstream 192440 58187987 ~ 58192699 (+) True XLOC_025822
TCONS_00052818 lncRNA downstream 193107 58188654 ~ 58193860 (+) True XLOC_025823
TCONS_00052819 lncRNA downstream 214828 58210375 ~ 58212686 (+) False XLOC_025824
TCONS_00050690 mRNA upstream 2393 57991074 ~ 57991985 (+) True XLOC_025815
TCONS_00050689 mRNA upstream 15188 57948377 ~ 57979190 (+) True XLOC_025813
TCONS_00050687 mRNA upstream 164355 57825938 ~ 57830023 (+) False XLOC_025812
TCONS_00050686 mRNA upstream 170831 57820913 ~ 57823547 (+) True XLOC_025811
TCONS_00050685 mRNA upstream 177501 57797252 ~ 57816877 (+) True XLOC_025810
TCONS_00050691 mRNA downstream 2433 57997980 ~ 58006138 (+) False XLOC_025817
TCONS_00050693 mRNA downstream 2449 57997996 ~ 58006133 (+) True XLOC_025817
TCONS_00050694 mRNA downstream 96665 58092212 ~ 58097473 (+) True XLOC_025818
TCONS_00050695 mRNA downstream 124024 58119571 ~ 58131524 (+) True XLOC_025819
TCONS_00050696 mRNA downstream 137680 58133227 ~ 58154489 (+) False XLOC_025820
TCONS_00050688 other upstream 164459 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050682 other upstream 354930 57636374 ~ 57639448 (+) False XLOC_025808
TCONS_00050664 other upstream 2510731 55483513 ~ 55483647 (+) True XLOC_025789
TCONS_00050662 other upstream 2695220 55299043 ~ 55299158 (+) True XLOC_025787
TCONS_00050635 other upstream 3926739 54067523 ~ 54067639 (+) True XLOC_025764
TCONS_00050692 other downstream 2443 57997990 ~ 57998559 (+) False XLOC_025817
TCONS_00050699 other downstream 172976 58168523 ~ 58170414 (+) False XLOC_025821
TCONS_00050717 other downstream 706773 58702320 ~ 58710755 (+) True XLOC_025845

Expression Profile

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