RNA id: TCONS_00050693


Basic Information

Item Value
RNA id TCONS_00050693
length 2496
RNA type mRNA
GC content 0.43
exon number 9
gene id XLOC_025817
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 57997980 ~ 58006138 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGCAGTTCACAGACAGCgtgaacaacacaacaaacaaacctgaaataaactaaatataagtGAACCAGCTCTTCAGCACATCGTATTTTAGGTCAGAATGAGTGTGGGATTTATCGGAGCTGGTCAGCTGGCGCATGCGCTGGTCAAGGGCTTCACAGCCGCAGGTGTGATCGCCACACACAGGATAACAGCGAGTTCTCCAGACACTGACCTGCCGACGGTCATTGGCCTGAGAAAAATGGGAGCGTTCTTCACCACCAGTAATAAAGAGACCGTGAGCAAGAGTGACGTCCTTTTCCTGGCGGTCAAGCCTCATATCATTCCCTTTGTCCTGGACGAGATCGGCCCAGACATTGAAGACCGCCACCTCATCGTCTCCTGTGCTGCAGGAGTGACCATCAGCTCCATCGAGAAGAAACTGCTGCAGTACCGTTCAGCACCTAAAGTCATTCGCTGCATGACAAACACCCCGGTGGTGGTCCGCGAGGGGGCCACGGTTTACGCCACAGGCACCCATGCGGAGGTGGAGGACGGGAAGCTCCTGGAGCAGCTAATGGCCAGTGTGGGCTACTGCACCGAGGTGGAAGAGGACCTGATTGATGCCGTCACTGGCCTCAGTGGCAGTGGACCAGCCTATGCATTCACAGCGGTTGATGCTCTTGCTGATGGAGGGGTGAAGATGGGATTGCCCAGAAGACTGGCTGTACGACTGGGAGCTCAGGCCCTGCTTggAGCGGCAAAAATGCTCCTTGAGTCAGAGCAACACCCTGGACAGTTAAAGGACAACGTGGCTTCGCCTGGAGGTGCTACAATCCACGCTTTGCATGTGATGGAAAGTGGCGGTTTCCGCAGCCTCCTGATCAATGCTGTGGAGGCTTCGTGCATTAGAACCAGGGAGCTTCAGTATTTGGCAGATCAAGAGAAGATCTCTCCCGCTGCCATCAAGAAGACGACTCTGGACAAAGTGCTCCAGCAGCCGGGGGTGACAGCAGCAGGGGTCGGGGTCCGGACAGGAATCAACCTCTTTAACAGTACAAACCCCAAACACAAGAAAAGCTGAACCCAATTAGCAGAACAACCAACTGACACATAGACAAAACCACTCCAAAGATTTGCAGATCAGATGATAGAACCAAAAATACTTGAAATAGTCTTCATGAACTGGTTAGTGGGAttcacagttgaaaccagaagtttaaatacacaaaacataaccattaaaaaaaaaaagtctgatggttaatcatactaaatgtttactattttaggtccattaggattacctacagtaaatgatttacatttgctaaatgccagaattttttttgagaatttttattaatttctagacggTCAAAAGTTGACACacatttccacattttttttagctttgcttttaaactgtataactttggtcaaatgttttgggaatccttccacaagcttttcacaatagtttgaaggaattttggcccattacTCTTGACAGAAttagtgtaactgagtcagatttgtaggctgtactgcttgcacaagctttttcaactctgcccacaaattttctataggattgagatcagggctttgtgatggccactccaaaacattcactctgttgtccttaaagcacatttgaactaatttggcagtatgcttaggttcatggtctgtttggaagacccatttgtggccgaGTTTTAATTtcttggctgatgtcttgagatgtggcttcagtatttctacataatgttctttcctcatgatgccatctatgttgtgaagtggaccagtccctcctacagcaaaacagccccacaacatgatgctgccgcccccatacttcacagttgggatggtgttcctaggcttgtaagctttacCCATtgttctccaaatgtaacactggttattaaggccaaacagttcaatcagaataacaggacatgtctccaaaatttagtcttttcccagtgtaatttagcaaattgtaatctgccttttttgttgattctggctttgtgctTGCGGTTTTCCTTAAAtcctattctacagttgtgcctccaattaactcagaggttgtcaattagccaatcagaaacttccaaacccttgacaccatcatctgagctttttcagaggcagaataatcttattgaatgtaaacttgactttcaagaaaagttataacaatttctcaaaatatctctctcattattctgctattaagcataacagaaacacatttggtAATCCTAACCTAGCtaaaaaaagtttagtcacattaatatctgacttttaaaaaaatgattatgtgcctttttatacaatgcatgtaaatttcctctggtttcaactgtatatattttattctgtGCTCAGATACAATTTTATATTGCGCTTTTAGCTAACGCTAGTTTGGACCAACTTTAAGCAATAATTTCTGTTGATATACACTGTAACCGCTGTAACTGTATTTAATAAATCATGTCTAATCT

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0055129 L-proline biosynthetic process biological_process
GO:0008652 cellular amino acid biosynthetic process biological_process
GO:0006561 proline biosynthetic process biological_process
GO:0005575 cellular_component cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0004735 pyrroline-5-carboxylate reductase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1675 Predicted to enable pyrroline-5-carboxylate reductase activity. Predicted to be involved in L-proline biosynthetic process. Predicted to act upstream of or within proline biosynthetic process. Used to study autosomal recessive cutis laxa type IIB. Human ortholog(s) of this gene implicated in autosomal recessive cutis laxa type IIB and autosomal recessive cutis laxa type IIIB. Orthologous to human PYCR1 (pyrroline-5-carboxylate reductase 1).

Ensembl:

ensembl_id ENSDART00000193840

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052816 lncRNA upstream 2449 57994378 ~ 57995547 (+) True XLOC_025816
TCONS_00052815 lncRNA upstream 11149 57981258 ~ 57986847 (+) True XLOC_025814
TCONS_00052387 lncRNA upstream 229330 57766624 ~ 57768666 (+) True XLOC_025809
TCONS_00052814 lncRNA upstream 356906 57636374 ~ 57641090 (+) False XLOC_025808
TCONS_00052388 lncRNA downstream 130809 58136942 ~ 58137294 (+) True XLOC_025820
TCONS_00050700 lncRNA downstream 167944 58174077 ~ 58180383 (+) True XLOC_025821
TCONS_00052817 lncRNA downstream 181854 58187987 ~ 58192699 (+) True XLOC_025822
TCONS_00052818 lncRNA downstream 182521 58188654 ~ 58193860 (+) True XLOC_025823
TCONS_00052819 lncRNA downstream 204242 58210375 ~ 58212686 (+) False XLOC_025824
TCONS_00050690 mRNA upstream 6011 57991074 ~ 57991985 (+) True XLOC_025815
TCONS_00050689 mRNA upstream 18806 57948377 ~ 57979190 (+) True XLOC_025813
TCONS_00050687 mRNA upstream 167973 57825938 ~ 57830023 (+) False XLOC_025812
TCONS_00050686 mRNA upstream 174449 57820913 ~ 57823547 (+) True XLOC_025811
TCONS_00050685 mRNA upstream 181119 57797252 ~ 57816877 (+) True XLOC_025810
TCONS_00050694 mRNA downstream 86079 58092212 ~ 58097473 (+) True XLOC_025818
TCONS_00050695 mRNA downstream 113438 58119571 ~ 58131524 (+) True XLOC_025819
TCONS_00050696 mRNA downstream 127094 58133227 ~ 58154489 (+) False XLOC_025820
TCONS_00050697 mRNA downstream 161155 58167288 ~ 58178161 (+) False XLOC_025821
TCONS_00050698 mRNA downstream 161170 58167303 ~ 58185030 (+) False XLOC_025821
TCONS_00050688 other upstream 168077 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050682 other upstream 358548 57636374 ~ 57639448 (+) False XLOC_025808
TCONS_00050664 other upstream 2514349 55483513 ~ 55483647 (+) True XLOC_025789
TCONS_00050662 other upstream 2698838 55299043 ~ 55299158 (+) True XLOC_025787
TCONS_00050635 other upstream 3930357 54067523 ~ 54067639 (+) True XLOC_025764
TCONS_00050699 other downstream 162390 58168523 ~ 58170414 (+) False XLOC_025821
TCONS_00050717 other downstream 696187 58702320 ~ 58710755 (+) True XLOC_025845

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00013210 True 2309 mRNA 0.47 8 CM030125.1 24907121 ~ 24912555 (-)