RNA id: TCONS_00050694



Basic Information


Item Value
RNA id TCONS_00050694
length 879
RNA type mRNA
GC content 0.42
exon number 6
gene id XLOC_025818
representative True

Chromosome Information


Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 58092212 ~ 58097473 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CGCATCAGAGTGTTATATATCCAtcactgtgtttgtgtttcatcTACAGTTTGAAAAAGAGCAGAGCCTCTCAACACAGGTCAAAATGATAACTGTAAGtgttttcaaatCGTGAAGTGGAACCAAAATCAATTCTGTCAAATTCAAACAATTGCAGCTGCCAAGAATTCATTTTGGGCACCAGACCTTGTTATAGCAGAGAGCATCAGTACTGAGTTTGGAGGAAAGGAGTCTCTAAACGTGCAGTTGATCTACTTTGGCTACACACTTTTGTCTGAGATACTTTCTCTGAACACCGCCTGTAAGCTGGACCTCTACAAGTTCCCCTTCGACACCCAGAGCTGCAATATAACACTTCAGTCTGCAGCGTATTCAAATATAGATCTGAAAATATTTATGCTGCATGATACAGGCGTTCTTACAAATTCTTCCAAGCAATCCTTTCAGTCCCAGGGGGAGTGGGAGCTCCTCAATATAAGTACAATCAAATCTAAATTCAGCCCTTGGTATAGCTACACAGATCAGCTGATATATCAGATCACCATCAGAAGAAGACCTCTGCTGCATGTCATCAACATTATGCTACCAGTGTTTTCCTTCCTTGTGCTGGACGTGACCTCCTTCTTCATGGATGTAGACGGAGCAGACAAGCTGAGCTTTAAAGTGACTTTACTTCTGGCTATTTCTGTGCTGCTGCTGATTCTTAATGACACCCTGCCCTCAACGGCTGATAAAGTTCCTCTGATTGGGATTTACTGCAGTGTGATTTTCAGTTTCATTGGTATCAGCATACTGGAGACCATCTTTGTGAATTTTCTGAAGGCTAGAGGAGCTGACAGTAGATCATCTGCATCAGCTGATGTTGCTGAACAAGATGGT

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000156059

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00052816 lncRNA upstream 96665 57994378 ~ 57995547 (+) True XLOC_025816
TCONS_00052815 lncRNA upstream 105365 57981258 ~ 57986847 (+) True XLOC_025814
TCONS_00052387 lncRNA upstream 323546 57766624 ~ 57768666 (+) True XLOC_025809
TCONS_00052814 lncRNA upstream 451122 57636374 ~ 57641090 (+) False XLOC_025808
TCONS_00052388 lncRNA downstream 39469 58136942 ~ 58137294 (+) True XLOC_025820
TCONS_00050700 lncRNA downstream 76604 58174077 ~ 58180383 (+) True XLOC_025821
TCONS_00052817 lncRNA downstream 90514 58187987 ~ 58192699 (+) True XLOC_025822
TCONS_00052818 lncRNA downstream 91181 58188654 ~ 58193860 (+) True XLOC_025823
TCONS_00052819 lncRNA downstream 112902 58210375 ~ 58212686 (+) False XLOC_025824
TCONS_00050691 mRNA upstream 86074 57997980 ~ 58006138 (+) False XLOC_025817
TCONS_00050693 mRNA upstream 86079 57997996 ~ 58006133 (+) True XLOC_025817
TCONS_00050690 mRNA upstream 100227 57991074 ~ 57991985 (+) True XLOC_025815
TCONS_00050689 mRNA upstream 113022 57948377 ~ 57979190 (+) True XLOC_025813
TCONS_00050687 mRNA upstream 262189 57825938 ~ 57830023 (+) False XLOC_025812
TCONS_00050695 mRNA downstream 22098 58119571 ~ 58131524 (+) True XLOC_025819
TCONS_00050696 mRNA downstream 35754 58133227 ~ 58154489 (+) False XLOC_025820
TCONS_00050697 mRNA downstream 69815 58167288 ~ 58178161 (+) False XLOC_025821
TCONS_00050698 mRNA downstream 69830 58167303 ~ 58185030 (+) False XLOC_025821
TCONS_00050701 mRNA downstream 134087 58231560 ~ 58292496 (+) True XLOC_025825
TCONS_00050692 other upstream 93653 57997990 ~ 57998559 (+) False XLOC_025817
TCONS_00050688 other upstream 262293 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050682 other upstream 452764 57636374 ~ 57639448 (+) False XLOC_025808
TCONS_00050664 other upstream 2608565 55483513 ~ 55483647 (+) True XLOC_025789
TCONS_00050662 other upstream 2793054 55299043 ~ 55299158 (+) True XLOC_025787
TCONS_00050699 other downstream 71050 58168523 ~ 58170414 (+) False XLOC_025821
TCONS_00050717 other downstream 604847 58702320 ~ 58710755 (+) True XLOC_025845

Expression Profile


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