RNA id: TCONS_00050695



Basic Information


Item Value
RNA id TCONS_00050695
length 1538
RNA type mRNA
GC content 0.42
exon number 9
gene id XLOC_025819
representative True

Chromosome Information


Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 58119571 ~ 58131524 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CATTTGTCTGAGATGGAGTTTTCTCTCTTCACTACACATCTACACTGGCTACTGCTATTTCTTGCCTCAAGagGATGGGTGTCTGATGCACAAATTTGCAATGCCTCAGCTTTTGCTAATTCATACGAGCAACTTTATAAATATCTTGGCCTGGGCGGAAATGACAATCGGACAACATACATGCGGCCTATGTTCCCAGGGCAAACCTACACCCGTGTTTTGGTGGACTTGTATGTGACCTCCATCGTAGAAGTGTTTGAAAAAGAGCAGAGGCTCTCAACACAGGTCAAAATGATAACCGTTTGGTTCGACTCGAATGTGCTGTGGAACTCATATAAGTTTTGTCAAATTCTAACGATTGCAGCTCCAAGGAATTTATTTTGGAGACCAGACATTGTTATAGCAGAGAGCGTCAAGACAGAGATCGGAACAGTAGAGTCTTCCTATGTGCAATTGGTCTTTTTTGGCTATGTGGTTTTGCCTGAAGTTTTGTCTCTGAACACAGTCTGTAAGCTGAACCTCTACAGGTTTCCCTTCGACACCCAGAGCTGCAATATAACAATTCAGTCTGTGGCGTATTCAAATGTGGATCTTAAACTTGAGACATTGCATGATACAGGCGTTCTTACGAATTCTTCCAAGCAATCCTTTCAGTCCCAGGGAGAGTGGGAGCTCCTCAATATAAGCACATCTAAGTCTAAAGTCTTCCTTATGTTTGGCTACGCAGATCAGCTGATATATCAGATCACCATCAAAAGAAGACCTCTACTGCATGTCATCAACATTATCCTACCAGTGTTCTTCTTCCTTGTGCTGGACGTGACCTCCTACTTCATAGACACAGACGGAGCCGACAAGCTCAGCTTTAAAGTGACTTTACTGCTGGCTATTTCTGTGCTGCTGCTGATTCTTAATGATACCCTGCCCTCTACGACTTATGAACTTCCTCTGATCGGAATTTACTGCAGTGCGATTTTCAGTCTCATTGGCATCAGCATACTGGAGACCATTCTTGTGAATTTTTTGAGGGCTAAAGGAGCTAAGATCCTATCTGCATCAGCTGCTGTTACTGGACAAGATGatGGTGTTAGTGGCCCTCCGGTCGATCAAGACAGGGATCAAAAAGAGTTTCAGATTGCAATGTGGTGGATAAAAGTGGCAAGAATAACAGACATGATGTTCTTGATTCTCTATCTACTCACCATTGTTGTGTTTCTGTCTGTGCTTGGGAAAGTTTGGTACATACACTGATCTCATATTAATGAAATGACAAAAATGGAAACTTGTTAACACTAGAGCAACCAGAATTCTATAACTACTAGAAAATGATCACATGTGGTCAtacataatatatttacattcaaagcttcttttgagatattaaaattaagcttgcATCAGGGGtattgctagacataaagctctactgggaACGGACCCCCTCAAAAACATCACCATATATAGATCATTGTATATCAGACCCCCTAGGTTTTTGCAATTTCGCGATCAATGAATCCAACGCAATTCGACAAAAAGTT

Function


GO:

id name namespace
GO:0042391 regulation of membrane potential biological_process
GO:0050877 nervous system process biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0006811 ion transport biological_process
GO:0007165 signal transduction biological_process
GO:0043005 neuron projection cellular_component
GO:0045202 synapse cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022850 serotonin-gated cation-selective channel activity molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function
GO:0030594 neurotransmitter receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-267 Predicted to enable serotonin-gated cation-selective channel activity. Predicted to be involved in several processes, including chemical synaptic transmission; ion transmembrane transport; and regulation of membrane potential. Predicted to act upstream of or within ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane.

Ensembl:

ensembl_id ENSDART00000108979

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00052816 lncRNA upstream 124024 57994378 ~ 57995547 (+) True XLOC_025816
TCONS_00052815 lncRNA upstream 132724 57981258 ~ 57986847 (+) True XLOC_025814
TCONS_00052387 lncRNA upstream 350905 57766624 ~ 57768666 (+) True XLOC_025809
TCONS_00052814 lncRNA upstream 478481 57636374 ~ 57641090 (+) False XLOC_025808
TCONS_00052388 lncRNA downstream 5418 58136942 ~ 58137294 (+) True XLOC_025820
TCONS_00050700 lncRNA downstream 42553 58174077 ~ 58180383 (+) True XLOC_025821
TCONS_00052817 lncRNA downstream 56463 58187987 ~ 58192699 (+) True XLOC_025822
TCONS_00052818 lncRNA downstream 57130 58188654 ~ 58193860 (+) True XLOC_025823
TCONS_00052819 lncRNA downstream 78851 58210375 ~ 58212686 (+) False XLOC_025824
TCONS_00050694 mRNA upstream 22098 58092212 ~ 58097473 (+) True XLOC_025818
TCONS_00050691 mRNA upstream 113433 57997980 ~ 58006138 (+) False XLOC_025817
TCONS_00050693 mRNA upstream 113438 57997996 ~ 58006133 (+) True XLOC_025817
TCONS_00050690 mRNA upstream 127586 57991074 ~ 57991985 (+) True XLOC_025815
TCONS_00050689 mRNA upstream 140381 57948377 ~ 57979190 (+) True XLOC_025813
TCONS_00050696 mRNA downstream 1703 58133227 ~ 58154489 (+) False XLOC_025820
TCONS_00050697 mRNA downstream 35764 58167288 ~ 58178161 (+) False XLOC_025821
TCONS_00050698 mRNA downstream 35779 58167303 ~ 58185030 (+) False XLOC_025821
TCONS_00050701 mRNA downstream 100036 58231560 ~ 58292496 (+) True XLOC_025825
TCONS_00050703 mRNA downstream 223328 58354852 ~ 58372651 (+) True XLOC_025828
TCONS_00050692 other upstream 121012 57997990 ~ 57998559 (+) False XLOC_025817
TCONS_00050688 other upstream 289652 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050682 other upstream 480123 57636374 ~ 57639448 (+) False XLOC_025808
TCONS_00050664 other upstream 2635924 55483513 ~ 55483647 (+) True XLOC_025789
TCONS_00050662 other upstream 2820413 55299043 ~ 55299158 (+) True XLOC_025787
TCONS_00050699 other downstream 36999 58168523 ~ 58170414 (+) False XLOC_025821
TCONS_00050717 other downstream 570796 58702320 ~ 58710755 (+) True XLOC_025845

Expression Profile


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