RNA id: TCONS_00050698


Basic Information

Item Value
RNA id TCONS_00050698
length 1633
RNA type mRNA
GC content 0.52
exon number 14
gene id XLOC_025821
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 58167288 ~ 58185030 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGTCTTTCACAGCAGCGGCTGAAGGAGAGAAACGGAGTCATGATGACGGGCTTCAGAGGTTTCACTCATCTCTCCAGACGCTGTTATGCTGCCGCCGCCAGGAGGAACAAGGCTCTAACTGAACCTCTAAGCCATAAGTCTGCAGCTCCACCAGTGCTCCAGCCACAGGATGTCCAGGTGTCCAAGCTGCCCAGCGGTCTTGTGGTGGCCTCTCTGGAGAACTACTCCCCCGTCTCCAAAATCGGTGTGTTTGTGAAAGCCGGCAGCCGCTATGAGACTGCAGAAAACCTGGGCGTCACGCACATGCTCAGATTAGCAGCGAATATGACCACTAAAGGTGCGTCAGCCTTCAAGATCTGTCGCAGTCTGGAGGCTCTGGGTGCTAGTTTGAGTGTGACGTCTTCGAGGGAACACATGGTATATTCCCTGGACTTTCTTAGAGATGATTTtGACGGTGTGATCGAATACCTTGTGGATGTGACTACTGCTCCTGACTTCAGACCCTGGGAGTTGGCAGATCTCACCCCGAGGGTCAAGATCGACAAAGCCTTGGCTGAACAGAGCCCACAGATAGGTGTCCTGGAGAAGCTGCATGAAGCTGCTTATAAAAACGCCTTGTCCAACTCGCTCTACTGTCCAGACATCATGCTGGGGAAGATCAGTGTTGATCATCTTCAGCAGTTCTTTGACAATAATTACACCAGTGCAAGAATGGCTCTCGTTGGATTAGGGGTCAGTCATGCGGCTCTGAAGACGGTCGGTGAGCGATTCTTCGGTTCTCATAAAGGAGCCGGAGCACCAGGAGCCAAAGCTGTGTACCGCGGCGgtgAGCTGCGGGTTCAGGGCACTGGATCTCTGGTTCACGCTCTGCTGGCTTGTGAAGGAGCTGTGACGGGCTCAGCTGAGGCCAACGCCTTCAGTGtgctgcagaggattctgggagCTGGACCACATGTCAAGAGAGGATCCAACATCAGCAGCAAACTCAGCCAGGGCATCGCCAAGGCAACCGCTCAGCCATTTGACGCCACAGCTTTCAGCACTACTTACTCAGACTCGGGGCTCTTCGGGCTCTACATCATCTCTCAAGCAGACTCGACCCGCGAGgtcaTCAGTTCGGCTGTGGCTCAGGTGACTGCTGTGGCGGAGGGAAAGCTGACCACTGATGACCTTACCAGAGCAAAGAATCAGCTGAAGGCAGATTATCTGATGTCTCTGGAGAGTTCAGACGTGCTGCTGGAGGAGCTGGGGGTTCAGCTTTTAAACAGCGGCGTCTACAGTTCACCACAGACTGTGACACAAAGCATCGACTCGGTGACCTCCAGCGACGTCCTCAAAGCTGCGAGGAGGTTTGTTGAAGGCCAGAAGAGCATGTCGAGTTGTGGATATCTGGAAAACACACCGTTTCTGGATGAGCTGTGAGGAAGTCCCGCTCTACAGTGCAGATGTTGTTCAGCTCTTTCCTGAGTGTACAACTGATCTGAGAGCTGTCTGAAAGCCGGACTGCTGTCCACACTTGTTTTCTGCTCAGATCATCATGAAGTCTGGTGTTCAGTCTCGCTTTATTAACATCAGTTTCATCTGTTTGACTGTATGTCTGATGTAGATTCATTAAAACAGATCTATCAGTGA

Function

GO:

id name namespace
GO:0005739 mitochondrion cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-405 Predicted to enable metal ion binding activity. Predicted to be active in mitochondrion. Is expressed in female organism. Human ortholog(s) of this gene implicated in mitochondrial complex III deficiency nuclear type 5. Orthologous to human UQCRC2 (ubiquinol-cytochrome c reductase core protein 2).

Ensembl:

ensembl_id ENSDART00000010395

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052388 lncRNA upstream 30009 58136942 ~ 58137294 (+) True XLOC_025820
TCONS_00052816 lncRNA upstream 171756 57994378 ~ 57995547 (+) True XLOC_025816
TCONS_00052815 lncRNA upstream 180456 57981258 ~ 57986847 (+) True XLOC_025814
TCONS_00052387 lncRNA upstream 398637 57766624 ~ 57768666 (+) True XLOC_025809
TCONS_00052386 lncRNA upstream 526716 57636416 ~ 57640587 (+) True XLOC_025808
TCONS_00052817 lncRNA downstream 2957 58187987 ~ 58192699 (+) True XLOC_025822
TCONS_00052818 lncRNA downstream 3624 58188654 ~ 58193860 (+) True XLOC_025823
TCONS_00052819 lncRNA downstream 25345 58210375 ~ 58212686 (+) False XLOC_025824
TCONS_00052820 lncRNA downstream 26275 58211305 ~ 58212686 (+) True XLOC_025824
TCONS_00052821 lncRNA downstream 115008 58300038 ~ 58303363 (+) False XLOC_025826
TCONS_00050696 mRNA upstream 12814 58133227 ~ 58154489 (+) False XLOC_025820
TCONS_00050695 mRNA upstream 35779 58119571 ~ 58131524 (+) True XLOC_025819
TCONS_00050694 mRNA upstream 69830 58092212 ~ 58097473 (+) True XLOC_025818
TCONS_00050691 mRNA upstream 161165 57997980 ~ 58006138 (+) False XLOC_025817
TCONS_00050701 mRNA downstream 46530 58231560 ~ 58292496 (+) True XLOC_025825
TCONS_00050703 mRNA downstream 169822 58354852 ~ 58372651 (+) True XLOC_025828
TCONS_00050704 mRNA downstream 194420 58379450 ~ 58416968 (+) False XLOC_025829
TCONS_00050705 mRNA downstream 197542 58382572 ~ 58416867 (+) True XLOC_025829
TCONS_00050706 mRNA downstream 270398 58455428 ~ 58468835 (+) True XLOC_025831
TCONS_00050692 other upstream 168744 57997990 ~ 57998559 (+) False XLOC_025817
TCONS_00050688 other upstream 337384 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050682 other upstream 527855 57636374 ~ 57639448 (+) False XLOC_025808
TCONS_00050664 other upstream 2683656 55483513 ~ 55483647 (+) True XLOC_025789
TCONS_00050662 other upstream 2868145 55299043 ~ 55299158 (+) True XLOC_025787
TCONS_00050717 other downstream 517290 58702320 ~ 58710755 (+) True XLOC_025845

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000112_02242077_02249490.mRNA True 1484 mRNA 0.51 11 CI01000112 2241742 ~ 2249490 (-)