RNA id: TCONS_00050699


Basic Information

Item Value
RNA id TCONS_00050699
length 400
RNA type processed_transcript
GC content 0.57
exon number 2
gene id XLOC_025821
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 58167288 ~ 58185030 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gctccttcacgggactccacacttgtaaacaatcgctcgtgccattcgcgcggctctcggtcccgcccagactcgtcagcgctaccaagccgaccaatcacagagcttacactacgcgtcgttgcgacgtgtagttacatttttttgagaggtgcacgtcagtgccggcgacggccacggccaagggctatgcgtcagcgttgtagcatacgccggtgtttgacgcagaagtataaatcagccttaacccagggattctcaactggtgggcctcagcgatcctgcagAGACGCTGTTATGCTGCCGCCGCCAGGAGGAACAAGGCTCTAACTGAACCTCTAAGCCATAAGTCTGCAGCTCCACCAGTGCTCCAGCCACAGGATGTCCAGGTACACACGCT

Function

GO:

id name namespace
GO:0005739 mitochondrion cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-405 Predicted to enable metal ion binding activity. Predicted to be active in mitochondrion. Is expressed in female organism. Human ortholog(s) of this gene implicated in mitochondrial complex III deficiency nuclear type 5. Orthologous to human UQCRC2 (ubiquinol-cytochrome c reductase core protein 2).

Ensembl:

ensembl_id ENSDART00000154547

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052388 lncRNA upstream 31229 58136942 ~ 58137294 (+) True XLOC_025820
TCONS_00052816 lncRNA upstream 172976 57994378 ~ 57995547 (+) True XLOC_025816
TCONS_00052815 lncRNA upstream 181676 57981258 ~ 57986847 (+) True XLOC_025814
TCONS_00052387 lncRNA upstream 399857 57766624 ~ 57768666 (+) True XLOC_025809
TCONS_00052814 lncRNA upstream 527433 57636374 ~ 57641090 (+) False XLOC_025808
TCONS_00050700 lncRNA downstream 3663 58174077 ~ 58180383 (+) True XLOC_025821
TCONS_00052817 lncRNA downstream 17573 58187987 ~ 58192699 (+) True XLOC_025822
TCONS_00052818 lncRNA downstream 18240 58188654 ~ 58193860 (+) True XLOC_025823
TCONS_00052819 lncRNA downstream 39961 58210375 ~ 58212686 (+) False XLOC_025824
TCONS_00052820 lncRNA downstream 40891 58211305 ~ 58212686 (+) True XLOC_025824
TCONS_00050696 mRNA upstream 14034 58133227 ~ 58154489 (+) False XLOC_025820
TCONS_00050695 mRNA upstream 36999 58119571 ~ 58131524 (+) True XLOC_025819
TCONS_00050694 mRNA upstream 71050 58092212 ~ 58097473 (+) True XLOC_025818
TCONS_00050691 mRNA upstream 162385 57997980 ~ 58006138 (+) False XLOC_025817
TCONS_00050693 mRNA upstream 162390 57997996 ~ 58006133 (+) True XLOC_025817
TCONS_00050701 mRNA downstream 61146 58231560 ~ 58292496 (+) True XLOC_025825
TCONS_00050703 mRNA downstream 184438 58354852 ~ 58372651 (+) True XLOC_025828
TCONS_00050704 mRNA downstream 209036 58379450 ~ 58416968 (+) False XLOC_025829
TCONS_00050705 mRNA downstream 212158 58382572 ~ 58416867 (+) True XLOC_025829
TCONS_00050706 mRNA downstream 285014 58455428 ~ 58468835 (+) True XLOC_025831
TCONS_00050692 other upstream 169964 57997990 ~ 57998559 (+) False XLOC_025817
TCONS_00050688 other upstream 338604 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050682 other upstream 529075 57636374 ~ 57639448 (+) False XLOC_025808
TCONS_00050664 other upstream 2684876 55483513 ~ 55483647 (+) True XLOC_025789
TCONS_00050662 other upstream 2869365 55299043 ~ 55299158 (+) True XLOC_025787
TCONS_00050717 other downstream 531906 58702320 ~ 58710755 (+) True XLOC_025845

Expression Profile

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