RNA id: XM_021578065.2


Basic Information

Item Value
RNA id XM_021578065.2
length 2499
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC110500612
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 48420635 ~ 48653464 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtggagagatactACACAGACAAAGTAAGAGGTGGAGAGCTACTGTACAGACATagctagagagaggggtggagagagaataACCTCAGTTGTAAACGAGAAGCTTCAGTGAGGAGGACAAAGAGGAAAGAGACActgcagagaaaaagagagagggcaaTAAATACAGAGTAGCCCTGTGGGGACCAAGAGGTAAACTGACCCTGACAGAGCGCTCGCTGCGCTGCCAGCCCCCGGAGGCACCAGAGGAGCCCTGAGAGATTTGTCACATTAAGAAGAGCCCCCCAGTGCTCTCCACACACACATGAGCCTACCGCggccgcctctctctctctctctctcacacacgcacacaccagacCACAAGCCGGGGAACGTAGCCGgacagaggagtggagtggactggatgacaagaggagaggaaagtCACTGTTTCACTCAAAAGCCTAGAGGGAGGACCAAGAGGATTACACCCTGAAAAGGAGTCTCCATTCCCCTCGTGCCGCTCACCCCTGACCCCCGAAGCAATCATGAGCAGCTGCAGGAAGAGGTGCAAGAGGGAAATGTTTAAATTTGCCCAGTACCTGTACAGACTCGTCACGGGCACGCTCCATGCAGacaGCGTGGAGGATGAGTTGGAGCTTTCAGCCGTCCGCCATCGACCCGAGGGCCTGGAGCAACTGGAGGCCCTGACCCGCTTCAACCGCAAGGAGCTGCAGATCCTGTACCGAGGCTTCAAGAACGAGTGCCCTAGCGGCGTGGTCAATGAAGACACCTTCAAAGTCATCTACTCCCAGTTCTTCCCACAGGGAGACGCGTCGATGTATGCACATTTTCTGTTCAACGCGTTTGACACGGATAAAGATGGATCTGTGAGTTTTGAGGACTTTGTTATGggcctctctatcctcctccgAGGCTCAGTCCAGGAGAAGCTCAACTGGGCGTTCAATCTGTATGATATTAATAAGGACGGACATATTACTAAAGAGGAAATGCTTGACATCATGAAGGCCATCTATGACATGATGGGGAAATGCACATATCCCCTACTCAAAGACGATACCCCTCGACAACATGTGGAGATATtttttcagAAGATGGATAAAAATAAGGATGGTGTTGTAACCATAGACGAGTTTATTGACTGCTGCCAAAATGATGAGAACATCATGAGGTCGATGCAGCTCTTTGAAAACGTAATTTAACTCGTGGCTGACCTGGAGAGCTCTGGACTCGACTATCAACAGACACCAACGAACAACCAGCATACAGCGCAATGGACCACACAAATCATACATGTAATGGTATGAAACATTCTGGaataactgtaaaaaaaaaaaagaaaaaagaattGATCTTTACAATCTTTCCTTTCCAATTTGAGTTTTGTGGTTTGATTAAGTAGATTGAACTCTTCAAATCTCCTGTGTACAAAGACACATATATCTTAACAGCTGTGCTGCAGTCACCATTTACAGTATCTGCAGTACAGGAATCCAGCAAACTGGGTCATCACTGTTTCACACAGACACAAAATAAtgaaccccgcctatttctaagatgtatcttcttaaaattgtattccaaaccttaaccctgatTTTATACCAAAccttaaattaaaaccaaaatgcaaatttttgttttcattaatttTTACGATATTGCCAATTTTGCATTTGTgcctgtgttatctagtggaaaccagCAAAATTTGTTATCTTATGCCACTGCCTTTAAACAGATGGACAACAATGAGCCTGAAAGGTGAAAGTTTGTATGATGAATAGTGACATAACTGTATGCTGAAATCAGGCTCAGAATTCCAGAATGTTCCTAACCACTGAGGTTTTTCAGCCACCACGGTCCATCCTTTGCTCTCCCAGCACCCAAGTAAAATAGACTTAACATtgtaccatttaaaaaaaaaagtgtatataCTCTAAGAATCTATGTGGAACTTTCAACTTTGTTCATGCTTACTTGCCAACTAAAATGAGACGATGCACTCCACGTTGAACGGTGAAAAGTATCATTAGAAGCACACAGGTAGCTGTTACTTACATTGAGTGTGTGATTAGGAGAAACAATTATCTTGCCACAAGATTATGCTGCttttaaatgtactgtattttatttgtCCGTACATGTCTGTATTCCCCATGTGTCCTGTTGACTTGTTTTCATTCATGTTTCAAATAACAATTTTGCAGGTTACACTGGTATGTTGGATTTTGAATTAtatagatatggtagatatgctAGTCAATGTACAAAGGGATAGTCAGGTGGACAGTATTAAGCAGAAGCTCACTCTTGGGGGGAATTGAATATTTTGAATATGCAAGTTTATCACTGTCCTTTGCAGAGGGTCACTGGGGTGAAGCTATAGAAGCAAATTGGAATCTGTCATACTTTGGTTTTGAGAGGTAGatcagaaacaacccctatccccaACTATCTagacaataaaaaatgtaaaaataaaaaaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2000138 lncRNA downstream 15474 48394466 ~ 48405161 (-) True G1746821
TU2000095 lncRNA downstream 93227 48327155 ~ 48327408 (-) True G1746787
TU1999663 lncRNA downstream 187448 48232945 ~ 48233187 (-) True G1746385
TU1999642 lncRNA downstream 199323 48220988 ~ 48221312 (-) True G1746364
TU1999637 lncRNA downstream 203999 48216425 ~ 48216636 (-) True G1746359
TU2000327 lncRNA upstream 80714 48657697 ~ 48658321 (-) False G1747005
TU2000328 lncRNA upstream 80761 48657744 ~ 48658321 (-) True G1747005
TU2000367 lncRNA upstream 158585 48735568 ~ 48735792 (-) True G1747038
TU2000396 lncRNA upstream 203351 48780334 ~ 48780543 (-) True G1747067
TU2000412 lncRNA upstream 216199 48793182 ~ 48793452 (-) True G1747083
XM_021578062.2 mRNA downstream 34425 48347195 ~ 48386210 (-) False LOC110500609
XM_036958067.1 mRNA downstream 34428 48353513 ~ 48386207 (-) True LOC110500609
XM_021578061.2 mRNA downstream 34429 48353513 ~ 48386206 (-) False LOC110500609
XM_021578058.2 mRNA downstream 83592 48326396 ~ 48337043 (-) False LOC110500608
XM_021578069.2 mRNA upstream 98666 48675649 ~ 48732810 (-) True LOC110500613
XM_036958072.1 mRNA upstream 338901 48915884 ~ 48975325 (-) False LOC110500614
XM_036958073.1 mRNA upstream 338901 48915884 ~ 48975325 (-) False LOC110500614
XM_036958074.1 mRNA upstream 338901 48915884 ~ 48975325 (-) False LOC110500614
XM_036958075.1 mRNA upstream 338901 48915884 ~ 48975325 (-) False LOC110500614
TU2000153 other downstream 9882 48408491 ~ 48410753 (-) True G1746833
TU1996837 other downstream 2246901 46171967 ~ 46173734 (-) True G1743697
TU1996524 other downstream 2607742 45810413 ~ 45812893 (-) True LOC110500942
TU1996508 other downstream 2648204 45770822 ~ 45772431 (-) True G1743429
TU1996423 other downstream 2686471 45730315 ~ 45734164 (-) True LOC110500574
TU2001151 other upstream 843495 49420478 ~ 49424330 (-) True LOC110500878
TU2001316 other upstream 882705 49459688 ~ 49477063 (-) False G1747906
TU2001321 other upstream 922508 49499491 ~ 49501927 (-) True LOC110500619
TU2001319 other upstream 935086 49512069 ~ 49514164 (-) True G1747908
TU2001309 other upstream 1007623 49584606 ~ 49585178 (-) True G1747906

Expression Profile