RNA id: XM_021578069.2


Basic Information

Item Value
RNA id XM_021578069.2
length 5572
RNA type mRNA
GC content 0.54
exon number 19
gene id LOC110500613
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 48675649 ~ 48732810 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATGCTTTTACTAGACAGTATCGTCTTATTCCTTTTGTATTTAAAGGTAGATCCAACTGCTCAGAGAGAATCGGAGAAAGGGGCGGTCTATGTGGAGTGACGTCAGTGGGTGGAATTGCAACATGGAGCCAAGGGCAGGACTGTGAGAGAAGAGTTCCCAATGGAAAGAAAGCCAATGAATACTTTCAGAGAGAGACGTGGACGCTCCAATTGAAAGTCAAGGACAGCAATTCTGGATATTTACTCAAACTTGGAAGGGACCCACTTTAACTCATATTTAAACACAAGATTACTGACTAACTCGGAGTGGGATTATGTTTCTTGCTTTCGTTTTTTTAGGAGATGTCCCATGATTACATTTTGCACCAACAACTGGAGTCGATGGGCGCCACTAAAGTGAAAAGTTGCTTACAGCTGTTTTAGTTAGTTGTAATGCTATTTAAGTGTTCCAGTCTACGGCTCTCGGGATGAGTTCTCTTAAGGAGAAAGTTTTTAAAGCTAAGGCGTGATCAAATTTCCTGAAATGAGAGTGTGTTATCTTGGGATGACTGCAGCTGTCTCTTGGTGGAGTAGGGAAATTCTCAATTAGATCCGCGCTATTGGCAACAAAGAACATATTTTCTCTATCGCGGAAGTTTCGTTGTGTAACCCTGAAAAATCGTTACAATTACAAGTgaacagttgttttttttcttttttcggGAAGGCTGCAAAGACCTTATTACGAAATGGAATTGTGAATCGTGCCGTTTGGCAAACAAAGGATGTACAGACCCTCTCTCGGATTGATTGACGCTGAACACATACATCGAAACCTTTGCAAGAAATGGAGGAGGGAATCCAAATCCACATTATAGTGGACAAGATGTTTGCAACATGACTAAAACTGTCCGGGTATTCTGAGGGACGTTTTGGCTCACCCTATTTCCAGAAAGAACCAGGCCATTTTATACTACACACACAATTCCCAGCCTCCTGCGCTACttgatattaatatattattttatttgccAATGCTACAGTAGCCTAATTATCTTGGAATATATTTTGAAAATGAGGGTATGTGCGGTTGCTTTGTTGCAATTGTTATTTGTTTTGCTACTCGGAGGCGATGGCTCTGCGGTATCATCTGACTGTAAATCATATGATGAACGTTCAAAGAGCGCAGGGAAAAGCACACCATCAGTGACCACGGCGGATAGGAAAGTGGTCTGCAGCAATATGGAACTCCATCAGGTGTTACCGCCGGACTCCTTCCCCAACAGAACAGTCACGTTgATTTTAAGCAACAACAAAATTCAGGAATTGAGAAATGGATCCTTCACCGGGCTGTCTACTTTGGAAAGATTGGACATGCGGAACAACATCGTCAGCCGTATCGAACCGGGGGCATTTCTTGGATTGCTCGCACTCAAAAGACTAGACCTGTCCAACAATCGCATTGGCTGCCTCAACGTGGACATATTCAAAGGCCTCACAAGTCTAGTTCGACTAAACCTTTCAGGGAACATGTTTTCATCGCTGGCCCAAGGGACGTTTGACAGCTTGGTGTCATTGAagactttGGAGTTCCAGACGCCGTACCTGCTGTGCGACTGCAACCTGTTGTGGCTGCTGCACTGGATCAAAGACAACAACGTGGGGGTGAAGGACACCAGCTGCTCCTACCCCCGCTCCCTGCAGGGCCAGCTCATCACCTCCACCAAGCCTGAGCTGTTCACCTGtgATGCACCCCTGGAACTGCCTTCCTTCCAGCTGACTCCGTCCCAGCGTCAGGTCGTGTTCCAGGGCGACAGCCTGCCCTTCCAGTGCCAGGCCTCGTTCGTGGCGGAGGACATGCAGGTGCTGTGGTACCAGGACGGCCTCATGGTGGAGCCTGATGCAGCCCAGGGCATCTTCATCGAGAAGAGCATGGTACAGAACTGCTCCCTCATCGCCAGTGCGTTGACCATCTCCAACATCCAGCCTGCTTCAACTGGGAAATGGGAGTGTCGTGTGAGGACCAGCCGAGGGAACACCACCCGTACCGTCGACATTGTGGTTCTGGAGAGCTCCGCCAAGTACTGCCCACCCGACAGAGTGTCCAACAACAAGGGTGACTTCAGATGGCCTCGTACCCTAGCAGGCATCACAGCCTACCTGCCCTGCAACAAGCTGGCGTCGGGCACGGGAATCTACTCTGGCTCGGTGGGTGAGGAGCGGCGTGCGCAGCGGAATTGTGACCGTGGGGGCCTATGGGCCGAGGGCGACTACTTCCGCTGCCAGTACCAGAAAGATGTAACTCGCTTCCTCTACATCATCAACCAGatGCCTCTGAACATGACCAACGCGGTGATCACGGCCCGCCAGCTGCTCGTCTACACAATCGAGGCCGCCAACTTCTCAGACAAGATGGACGTCATCTTCGTGGCTGAGATGATCGAGAAGTTTGGCAAGTTTGCCGAGAAATACAAGGAGttGGGGGTTGTGATGGTGGACATCTCCAGTAATCTGATGCACGCTGATGAGCGGGTGCTGCGGCTGGCTCAGCGTGAGGCCAGGGCCTGCTCCCGTATCGTGGAGTGTCTCCAGAGGATCTCTGTTCATCAGCTTGCCAGCGGAACCCAGGCCTACTCCACCAATTCCCATAACATCGCCCTGGAGGCCCACGCCATCAAGGCGAGCAGCTTCAATGGCATGACCTGCACACTGTTCCAGAAGCTGATGCCTGAACGCATCGCTCTCCGAGACCTGGGCCCACGCATTGACCTGGACGGCAACCCTGACCGCCAGCTCAGCTTCAAGTGTAACGTCACCAGCACCCTGTCCAACCTCTCTCTCAAGaaCACCATGGTGGAGGCGTCCCTGcagctccccccctctctgttctctcagtACCTGGGCCAGGCCGACGACAACGTCTACAAGCTTCACTTGCTGGCCTTCCGCAACGGCAAGCTCTTCCCATCCACGGGCAACTCCACCCTGCTGGCTGACGGTGGGAAGAGGAGGAACGTGGCCACCCCCGTTCTCCTGGCCAAGATTGAGGGTTTCCAGCTGCGCGGACTGCGTGTGCCGGTGAACGCCACGCTGCGGAGGTTTGCCCGTGGCTCGGACGCCGTGCCCGCCTGCTGGAACTTCAGCCTGCTGGGTGGGCAGGGTGGCTGGCAGAGCGAGGGCTGCCGTGTCCTGCGGCACCATGACAACTTCACCACGCTCTCCTGTGACTCGCTCAGCAACTACGCCGTGCTCATGGATCTTACTGGGGTGGAGTATTTCTCTCCCAGCATTGAGCCTCTCCACCCAGTCCTCTATGCCACAGCTATCGTCCTCCTGCTCTGTCTGCTGGCCATCATCATCAGCTACGTTTACCACCACAGGTCTGTCCGGATTAGCCGTAAGTTCTGGCACATGCTGGTCAACCTCTGCCTCCACATCTTCCTCACCTGCGGCGTCTTCGTGGGTGGCATCAACCAGACGCGTTACGCCAGCGTGTGCCAAGCTGTGGGCATAGTTCTGCACTACTCGACCCTGGCCACAGCTCTGTGGGTGGGCGTGACGGCACGCAACATCTACAAGCAAGTGACCCGCAAGGCCAAGCACTACGAAGAGCTGGACGAGCCCCCGCCCCCTCCACGACCCATGCTGAGGTTCTACCTAATAGGCGGAGGGATACCGATCATCGTCTGTGGCATAACCGCAGCCGCCAACATCAAGAACTACGGTAGCCAGGCCAACGCACCATATTGCTGGATGGCGTGGGAGCCCAGCCTGGGGGCCTTCTACGGCCCCGTCGGCTTCATCGTCTTCGTGGACTGCATGTACTTCCTTAGCATCCTCCTCCAGCTGCGCCGCCACCCCGAGCGCCGCTACGAACTCAAGGAACCCGCCGAGGAGCAACAGCGGCTGGCGATAGCGGGCAGCGATGCCGGAGACGTCCCGGCCACACTCCTCCACCTCCAGTCCCACGACGCCTCGTCCTCGACGGTGTCGGCTCCCCATGCCGTGTCCCTGTCAGCGCTGGAGAACGAGCATACGTTCGCGCTACAGCTCCTGGGCGCGGCGGTTGCTCTGGGGCTCTACGCGTCGCTGTGGGTGTTTGGCGCCATGGCCGTGTCCCAGGAGAGGCCGGCCGACCTGGTGTTCTCCTGCCTGTTTGGCGTTGCGGCGCTGGCTCTGGGTGGCTTTTTGTTGGCACACCACTGCGTCAACCGCCAAGACATGAGGCGCCACTGGGCCCAGGCCTGTTGCCCCGAGAGACGGGCCTACTCGGCGCAGGAGGACGCCCTGCTGCCACTGCCGGGGGCATCCACGGTGTCCGCGGCTGGGTCGGTCGGTAGGGGCAACGACGATGCGGCCAAGTGTGCCCACAGCAGCGCAGAGTCATCCTGCACCAATAAGAGTGGCCCCAGTGTGCGAAATTCCACCCAGGGAAGTAAACTGACCAATCTGCATGCAGAGGCAGCGCAGAACAAATCCTTGCCCCTACTAGCCCTGCCCGCCAATGGGGCAGCCATGCTGGACAACAGCCTGACGGAGCACTCGGTGGACAACGAGATCAAGATGCACGTGGCACCCGTGGAGGTGCAGTTCCGGCCTAACAACAACAATCCTGCCGCCAACGGACCCACGGGCCGGCATCACAAGAACAGGGCGCGGGCCCACCGGGCCAGCCGACTCACGGTGCTGCGCGAGTACGCCTATGACGTGCCCACCAGCGTGGACGGCAGCGTGCAGAGCGGCCCCCACAGGCGGCATCGCCACGAACACCACGACAGTCAGCAGGCGCGGTGCAGCCGACGGGCAGTCTACATGGCCTACAGGGAGCGCCACCAGAGCCAGACGCAACAGGACAGCAGCGACGCCAGCACGTCCCTGCCCCGACGCTCGCGCTACACCGACAAGGGAGGGGGCAGCACTAGCGCCCTAGGCAACGGAGCTATCGGAGTAGTGGGAAGTGGAAGTGTAGGATCAACAGTAGGAACAGGAGGAGAAGGTGAGGGGGCTGGGACTTCTGCGTCCGCTACGAGTAAAGACAGTAGTAGCATAAAGCAGCCCAATAACACCGAGCTGGTGGACGGCCAGCCCAAGTCGTACGGGCTCAACCTGGCTACACAAAACGGCACGCTCAGAAACAATGGGCAGATCAAGCCTATAATCAACACAGAGAGCTCGTGCTCAGCCAACATAAAAACGGGACTATGGAAACACGAAACTACTGTGTAGTGTGTTTTCTGCACCAAAGACTGCATGTCACGTGCGCTCTCCCTTCAACTGTGAAATTTTTGTTTCGATCATTGTTTATATTATTTTATGGTACAATGTTTCAAAACAATTGTTATTGAAAAAAATATCTTCAAAATAGTCACGCTATTTTGAGTTTGTGGAACGTGTGTGTTTTGGATGCCACTGGTCTGTCTCTGTAGTAGACATTTTGTAAATGGTTTATTTTTCTATCATTTAATCCTAATTAAATGAGTTATGGACGTGAAACTGCATGTTCTGTGCCGTTGCCTAGTGTGTATCCACTGGGCGGGTTCTTTTTTATTTTCTAGTTTGTTTCAGTGTAATAAACCAAACGTTTCTAATTCCA

Function

GO: NA

KEGG:

id description
K08462 ADGRA3, GPR125; adhesion G protein-coupled receptor A3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2000327 lncRNA downstream 17328 48657697 ~ 48658321 (-) False G1747005
TU2000328 lncRNA downstream 17328 48657744 ~ 48658321 (-) True G1747005
TU2000138 lncRNA downstream 270488 48394466 ~ 48405161 (-) True G1746821
TU2000095 lncRNA downstream 348241 48327155 ~ 48327408 (-) True G1746787
TU1999663 lncRNA downstream 442462 48232945 ~ 48233187 (-) True G1746385
TU2000367 lncRNA upstream 2758 48735568 ~ 48735792 (-) True G1747038
TU2000396 lncRNA upstream 47524 48780334 ~ 48780543 (-) True G1747067
TU2000412 lncRNA upstream 60372 48793182 ~ 48793452 (-) True G1747083
TU2000434 lncRNA upstream 75594 48808404 ~ 48811728 (-) True G1747105
TU2000534 lncRNA upstream 174948 48907758 ~ 48907965 (-) True G1747202
XM_021578066.2 mRNA downstream 22185 48420635 ~ 48653464 (-) True LOC110500612
XM_021578065.2 mRNA downstream 98666 48420635 ~ 48576983 (-) False LOC110500612
XM_021578067.2 mRNA downstream 157709 48420635 ~ 48517940 (-) False LOC110500612
XM_021578064.2 mRNA downstream 194247 48420635 ~ 48481402 (-) False LOC110500612
XM_036958071.1 mRNA downstream 225200 48420635 ~ 48450449 (-) False LOC110500612
XM_036958072.1 mRNA upstream 183074 48915884 ~ 48975325 (-) False LOC110500614
XM_036958073.1 mRNA upstream 183074 48915884 ~ 48975325 (-) False LOC110500614
XM_036958074.1 mRNA upstream 183074 48915884 ~ 48975325 (-) False LOC110500614
XM_036958075.1 mRNA upstream 183074 48915884 ~ 48975325 (-) False LOC110500614
XM_036958076.1 mRNA upstream 183074 48915884 ~ 48975325 (-) False LOC110500614
TU2000153 other downstream 264896 48408491 ~ 48410753 (-) True G1746833
TU1996837 other downstream 2501915 46171967 ~ 46173734 (-) True G1743697
TU1996524 other downstream 2862756 45810413 ~ 45812893 (-) True LOC110500942
TU1996508 other downstream 2903218 45770822 ~ 45772431 (-) True G1743429
TU1996423 other downstream 2941485 45730315 ~ 45734164 (-) True LOC110500574
TU2001151 other upstream 687668 49420478 ~ 49424330 (-) True LOC110500878
TU2001316 other upstream 726878 49459688 ~ 49477063 (-) False G1747906
TU2001321 other upstream 766681 49499491 ~ 49501927 (-) True LOC110500619
TU2001319 other upstream 779259 49512069 ~ 49514164 (-) True G1747908
TU2001309 other upstream 851796 49584606 ~ 49585178 (-) True G1747906

Expression Profile