RNA id: TCONS_00052817


Basic Information

Item Value
RNA id TCONS_00052817
length 261
lncRNA type antisense_over
GC content 0.35
exon number 2
gene id XLOC_025822
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 58187987 ~ 58192699 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGATCAGGCTTATTTGGCATTGTTCACAGATGAACATGATTTCTGATTCTGTAAGGCTGATTAAAACTACATGATGCAGAAATACTGAATCAAAAATTAATTAGACATCATGTTTTATTGGCCTGATATGATTTTGTATTATTGCTGATCAATCATAAATGAtgtttattattagaaatgttgaaataatagtggctcagtggttagcaccgtcacctcacagcaagaaggttcctggttcgagtctcagctgggtcagtt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00050700 lncRNA upstream 7604 58174077 ~ 58180383 (+) True XLOC_025821
TCONS_00052388 lncRNA upstream 50693 58136942 ~ 58137294 (+) True XLOC_025820
TCONS_00052816 lncRNA upstream 192440 57994378 ~ 57995547 (+) True XLOC_025816
TCONS_00052815 lncRNA upstream 201140 57981258 ~ 57986847 (+) True XLOC_025814
TCONS_00052387 lncRNA upstream 419321 57766624 ~ 57768666 (+) True XLOC_025809
TCONS_00052819 lncRNA downstream 17676 58210375 ~ 58212686 (+) False XLOC_025824
TCONS_00052820 lncRNA downstream 18606 58211305 ~ 58212686 (+) True XLOC_025824
TCONS_00052821 lncRNA downstream 107339 58300038 ~ 58303363 (+) False XLOC_025826
TCONS_00052822 lncRNA downstream 107543 58300242 ~ 58305878 (+) False XLOC_025826
TCONS_00052823 lncRNA downstream 107555 58300254 ~ 58305878 (+) True XLOC_025826
TCONS_00050698 mRNA upstream 2957 58167303 ~ 58185030 (+) False XLOC_025821
TCONS_00050697 mRNA upstream 9826 58167288 ~ 58178161 (+) False XLOC_025821
TCONS_00050696 mRNA upstream 33498 58133227 ~ 58154489 (+) False XLOC_025820
TCONS_00050695 mRNA upstream 56463 58119571 ~ 58131524 (+) True XLOC_025819
TCONS_00050694 mRNA upstream 90514 58092212 ~ 58097473 (+) True XLOC_025818
TCONS_00050701 mRNA downstream 38861 58231560 ~ 58292496 (+) True XLOC_025825
TCONS_00050703 mRNA downstream 162153 58354852 ~ 58372651 (+) True XLOC_025828
TCONS_00050704 mRNA downstream 186751 58379450 ~ 58416968 (+) False XLOC_025829
TCONS_00050705 mRNA downstream 189873 58382572 ~ 58416867 (+) True XLOC_025829
TCONS_00050706 mRNA downstream 262729 58455428 ~ 58468835 (+) True XLOC_025831
TCONS_00050699 other upstream 17573 58168523 ~ 58170414 (+) False XLOC_025821
TCONS_00050692 other upstream 189428 57997990 ~ 57998559 (+) False XLOC_025817
TCONS_00050688 other upstream 358068 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050682 other upstream 548539 57636374 ~ 57639448 (+) False XLOC_025808
TCONS_00050664 other upstream 2704340 55483513 ~ 55483647 (+) True XLOC_025789
TCONS_00050717 other downstream 509621 58702320 ~ 58710755 (+) True XLOC_025845

Expression Profile

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