RNA id: XM_036958111.1


Basic Information

Item Value
RNA id XM_036958111.1
length 3083
RNA type mRNA
GC content 0.45
exon number 10
gene id LOC110500881
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 50356174 ~ 50389454 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggtttcCTCATTATCATACGAACGTGACCTCGTTTGTGCTGCGGGCAGAATACTAGTCAGTTCTAAATGCAAACCCTAGTAGGCTGACGTTTGTTGCTCTTTCCTGTGTTGGATTGTGCATTGTTCTACTTTTGTCATTGTGACATCCGTATCAAGGGATAGGCTAcattatgtttattttatttggaTGATTCGAGCAGGCAGCAAGTTGCAAGAACTGGATCGCTGAACCTGCCACTTGCAAGCCCATGATCCCGTTGATTTATCCGCGTATGAAGCGTACTGTATGTTGATGAAATTCAAGCATGTCAGGAAAACAATTTAAAGGTCATGAGGTCAGTTGCTGcatcaaatattttatttttggaTTTAACATAATATTTTGGTTGCTCGGTGTGGCCTTCCTGGGCATTGGACTATGGGCCTGGAATGAGAAGGGTGTTCTCTCCAACATCTCGTCCATCACAGACCTGGGGGGCTTTGACCCCGTCTGGCTCTTCTTGGTGACGGGAGGGGTCATGTTCATCCTGGGCTTTGCCGGTTGCATCGGAGCGCTGAGGGAAAACACCTTCCTGCTCAAGTTTTTTTCTGTGTTCCTGGGGATCATCTTCTTCCTGGAGCTGACAGCTGGAGTGTTGGCCTTCACCTTCAAGGACTGGATCAAGGACCAGCTCAACTTCTTCATCAATAACAACATCCGGGCATATCGTGACGACATCGACCTCCAGAACCTTATAGACTTCACTCAGGAATATTGGGATTGTTGCGGCGCATTCGGAGCGGACGACTGGAACCTCAACATCTATTTTAACTGCACGGACACCAACCCCAGCCGGGAGAAATGTGGAGTccccttctcctgctgcaccaaGGACCCTGCGGAGGATGTGATAAACACGCAGTGTGGCTATGACGTACGAGCCAAAACTGACGTAGAACAGAAGACCTACATCCATGTGAAGGGCTGTGTGCCACAGTTTGAGAAGTGGCTACAGGACAACCTGACGCTAGTGGCTGGGATCTTCATAGGAGTTGCGTTGTTACAGATATTTGGAATATGCTTGGCACAAAACTTAGTTAGTGACATCGAAGCTGTGAGAGCAAGCTGTTTATTTACCTGATGTCGCTGCCCGGCTTGACCCAGGAACGCACAGGTCCAAGGTCTCTTCAGCATGGCTACGCCAGTCTCGGAGCATCAAAAGATGCTAGAACTAGGAATGATACCACCTGCACCATATTCCGTCATGATGACTGGCACATTCTGATCCTTTTTAAAGATGTttggggttgcaaaattccagtaactttccagaaatcccagttggaagatTCCTCCAATCAGGATTTCTGGGAATTTGGGGAAGTTACCCACGCTTTGCATCCCATTTGTTCCATGTGGTTCCATCCATGTGGTAAACACTGTGTAGAAATGTACAGAAAATAATGAAGACAAAAAAAattacttggggggggggggggggggggggtgtttgtaaATGCACTGCATGCCTATCACAATGGCATGGACTCGTTTAAATTCATGATGTACAGAAGCTCTTATTGACAGGTATTTTTAACAGTAAAATGGTAGCTGTATGTGGCGACACTGAGCATTAGGGAAGAGGGTAATGGTGCTAGAATACAAATGTACAGTAGTAGTCGCAGCCCTCAAGTCGTTCACTTTGAACTGCAGTAGCCTTGTCGGCTCAAGCGTTTTTGTGGCACAGATGAGCATTCGTTATATTTCATGGCATCTCTACCTGGGTGAAATACATACAGGTACGTTACATACTTTCAAATACTTGAGGTGGGCCTGATTTAGCACTTTTGGGGGGGACTAGTCAATTGGTTCTATTGTAACAGACAAGCTAAATCAAGTATCAatgtatttgacccaggtctgatCTCTACACACTCTCCATTAAAATGAATTGTCAATACATTCAATGAACTGAAACTTCATGTCCATTTCTTGCTATGGTAGTCCTCTGTTTTCAATACTGCTAAGTGATGTGTCAATCTTTAGGAATCCCTGTCACTTCATATTCAATCTTGTTCTGAGGGCTGAATGTGATTTGTTCGATTGCTCAGCGGGAGGAGCTTACATTGACCAGTGAGTGAATAAAACTCACTTCCTGACATTTGTTGGTGGTGGAGGGCGTAACACATGGGTTGCTGTGCTGAGGGTTTCTAGCTCAACGATCAGTGAGCCAAATTAAATAAATGCTTGTAGGGAGGTGGCAGGCGCGTTAAATACAGGTTGAGACAAGTTCCCTGTTGAGGATCCCCATGTCTTGTTTTCCAACCTTGAACTTTCTAAAGTTAACCAATCACTTTTCACATTTGTCTACCCATTTCTTGTGACTGGTTAAAGGACCAAAACCTAAGGCAGGTGGATGGGGTCCTGGGTGGCAGAGGTCGTAACATGAGGGTGTCCATGCATTAGGTCCTCGGTTCGATTCCTCGTGTGGCTTTTAAAATAACTTTTACTCCTTTCTGCCCTCAGAACAAGAAAATAAGGGTTTGATTCAATCTGTATCGTGGAAGTTCAGTGCTATAGCGCAATTGACACTTAATGTCCCACGTTCACGGAGATTGCGCTCATGGTAGACTTTGCATATAggctcaacagcttctacccccccaagccattagactgctgaacaattcaggAACATTTCCACTGATACCCCCTCccctcttgtacactgctgctacttgccgtttgtttgttacctatacatagtcacttcgcccccacctacatgtacagattacctcaactagcctgtacctctgcacactgactcggtaccggtgccccatCTATATAGCCTGGTTATTCttagtgttactttttatttttacctaCTTGGTAAATTATTTTGTTCTTGAACGGCATTggaggttaagggcttgtaagtaagcattaaggtaaggtctacacttgtttgATTTGATATCGGCTCAATCGCAAACTACCGTTACATTTGAAATCGCACTGAACTTCCacgatacggattgaatcgagccctttgtttttctttcatgcccatgaaataaataatttttgtTGACCTGC

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17345 TSPAN5; tetraspanin-5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2002591 lncRNA downstream 464 50353893 ~ 50355710 (-) True G1749013
TU2002568 lncRNA downstream 69832 50285977 ~ 50286342 (-) True LOC110500880
TU2002581 lncRNA downstream 84984 50270980 ~ 50271190 (-) True G1749004
TU2002535 lncRNA downstream 156589 50199258 ~ 50199585 (-) True G1748959
TU2002529 lncRNA downstream 168838 50187122 ~ 50187336 (-) True G1748954
TU2002681 lncRNA upstream 60095 50449549 ~ 50451358 (-) True G1749098
TU2002754 lncRNA upstream 196977 50586431 ~ 50586636 (-) True G1749149
TU2002759 lncRNA upstream 202109 50591563 ~ 50598287 (-) True G1749154
TU2002774 lncRNA upstream 227873 50617327 ~ 50617528 (-) True G1749168
TU2002787 lncRNA upstream 243548 50633002 ~ 50633320 (-) True G1749178
XM_021578123.2 mRNA downstream 14781 50338947 ~ 50341393 (-) True LOC110500642
XM_036958098.1 mRNA downstream 67904 50272053 ~ 50288270 (-) False LOC110500880
XM_036958099.1 mRNA downstream 69872 50272053 ~ 50286302 (-) False LOC110500880
XM_036958100.1 mRNA downstream 72653 50272053 ~ 50283521 (-) False LOC110500880
XM_021578118.2 mRNA downstream 98509 50251748 ~ 50257665 (-) True LOC110500638
XM_021578126.2 mRNA upstream 23602 50413056 ~ 50444454 (-) False LOC110500643
XM_021578125.2 mRNA upstream 23602 50413056 ~ 50472176 (-) True LOC110500643
XM_021578127.2 mRNA upstream 86575 50476029 ~ 50482772 (-) False LOC110500644
XM_021578128.2 mRNA upstream 86575 50476029 ~ 50482772 (-) True LOC110500644
XR_005038752.1 mRNA upstream 89153 50478607 ~ 50478737 (-) True LOC118943015
TU2001347 other downstream 767386 49587696 ~ 49588788 (-) True G1747934
TU2001309 other downstream 770996 49584606 ~ 49585178 (-) True G1747906
TU2001319 other downstream 842010 49512069 ~ 49514164 (-) True G1747908
TU2001321 other downstream 854247 49499491 ~ 49501927 (-) True LOC110500619
TU2001316 other downstream 879111 49459688 ~ 49477063 (-) False G1747906
TU2002718 other upstream 144551 50534005 ~ 50541498 (-) False LOC110500654
TU2002719 other upstream 144551 50534005 ~ 50541695 (-) True LOC110500654
TU2002708 other upstream 152981 50542435 ~ 50552525 (-) False G1749122
TU2002707 other upstream 153166 50542620 ~ 50552525 (-) True G1749122
TU2004288 other upstream 647249 51036703 ~ 51049088 (-) True LOC110500668

Expression Profile