RNA id: TCONS_00050702


Basic Information

Item Value
RNA id TCONS_00050702
length 1070
lncRNA type lincRNA
GC content 0.41
exon number 4
gene id XLOC_025827
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 58344862 ~ 58353587 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGATTCAGTCACTTCTTATGTGTCTGAGCGCTGCAGCACATCAAACCTGAACCTCCATGTGTGCCTGTTCACCGAAGTGAAGCACACTGAGTCGCAGGCCGAAACTGCACGGGCTCTGAGTGATCTGGCACACGCTGGACACGGGCGCTTCATCTGGACCACAGAAACCGGCGTCCTGGAGAGTGATGACATCAGTGTCCTGATTGAAGAAATGCAGACGGCGGCTAATTATTATCAGAAGAGCTGTGAGTTAGTGGACTCTCTGATGCAGAAGAGCTCCAGCGGAGGTTCAGGAGAGAGCAGCTCTTCATCTATCAGACCCCCAACCTCCAGCCCAAAATCCAAAGTGCCTTTACCTCGACCCACAACACTCAGCCTGGCCAGACAGGTCAGATTCTGCACAGTCAAACATCACACATCTGATCTGCACACGGTCACACATTAATTTGAGCatgaaatctaaaaattacaatgtttatttttctatagcttacattgttattcttaagatgaatatttacagtaatccatgcaagttacagtttttctcagacgctttggtgcatttctcacaacactatttacatttgcacaacagttaatgcaaactgcaaaacaattagtgcaaactgcaaaacctagctaataacctgcaaaagcgcgtcacttgctcaaaatagatagttcattcctcaaaagcaagtattgatgtcaatcaaagtgtcagtgtcatcaaaatgaaaagtcctgtcaccattgtttatgaacaagatagtcaaatggcttagtcctGTTTTCATTATGGCGgtttactctctacattttttcaatgcaaaaaaagtcagaagTTGGTGACACctgctgaaaatgctcaagacagcactatatactatttgcacagccatttgaacactacagtaaagttagacatcactgcatttagtaagggatctgagtacaagacactgaatatgtatgtttcacatttttattgcatttgctctttacaattctaatttattcacagcattgtgcaaaagaataaatacacccttttttacaacaaac

Function

GO:

id name namespace
GO:0019228 neuronal action potential biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0120039 plasma membrane bounded cell projection morphogenesis biological_process
GO:0048858 cell projection morphogenesis biological_process
GO:0032990 cell part morphogenesis biological_process
GO:0086010 membrane depolarization during action potential biological_process
GO:0051899 membrane depolarization biological_process
GO:0048666 neuron development biological_process
GO:0007409 axonogenesis biological_process
GO:1990351 transporter complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034706 sodium channel complex cellular_component
GO:0043005 neuron projection cellular_component
GO:0001518 voltage-gated sodium channel complex cellular_component
GO:0045202 synapse cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:1902495 transmembrane transporter complex cellular_component
GO:0061134 peptidase regulator activity molecular_function
GO:0030414 peptidase inhibitor activity molecular_function
GO:0004857 enzyme inhibitor activity molecular_function
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194460

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052822 lncRNA upstream 38984 58300242 ~ 58305878 (+) False XLOC_025826
TCONS_00052823 lncRNA upstream 38984 58300254 ~ 58305878 (+) True XLOC_025826
TCONS_00052821 lncRNA upstream 41499 58300038 ~ 58303363 (+) False XLOC_025826
TCONS_00052819 lncRNA upstream 132176 58210375 ~ 58212686 (+) False XLOC_025824
TCONS_00052820 lncRNA upstream 132176 58211305 ~ 58212686 (+) True XLOC_025824
TCONS_00052389 lncRNA downstream 71413 58425000 ~ 58429124 (+) True XLOC_025830
TCONS_00050707 lncRNA downstream 116348 58469935 ~ 58470519 (+) True XLOC_025832
TCONS_00052824 lncRNA downstream 200843 58554430 ~ 58595650 (+) True XLOC_025834
TCONS_00052825 lncRNA downstream 227002 58580589 ~ 58615939 (+) True XLOC_025835
TCONS_00052826 lncRNA downstream 234617 58588204 ~ 58624381 (+) True XLOC_025836
TCONS_00050701 mRNA upstream 52366 58231560 ~ 58292496 (+) True XLOC_025825
TCONS_00050698 mRNA upstream 159832 58167303 ~ 58185030 (+) False XLOC_025821
TCONS_00050697 mRNA upstream 166701 58167288 ~ 58178161 (+) False XLOC_025821
TCONS_00050696 mRNA upstream 190373 58133227 ~ 58154489 (+) False XLOC_025820
TCONS_00050695 mRNA upstream 213338 58119571 ~ 58131524 (+) True XLOC_025819
TCONS_00050703 mRNA downstream 1265 58354852 ~ 58372651 (+) True XLOC_025828
TCONS_00050704 mRNA downstream 25863 58379450 ~ 58416968 (+) False XLOC_025829
TCONS_00050705 mRNA downstream 28985 58382572 ~ 58416867 (+) True XLOC_025829
TCONS_00050706 mRNA downstream 101841 58455428 ~ 58468835 (+) True XLOC_025831
TCONS_00050708 mRNA downstream 118718 58472305 ~ 58487848 (+) True XLOC_025833
TCONS_00050699 other upstream 174448 58168523 ~ 58170414 (+) False XLOC_025821
TCONS_00050692 other upstream 346303 57997990 ~ 57998559 (+) False XLOC_025817
TCONS_00050688 other upstream 514943 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050682 other upstream 705414 57636374 ~ 57639448 (+) False XLOC_025808
TCONS_00050664 other upstream 2861215 55483513 ~ 55483647 (+) True XLOC_025789
TCONS_00050717 other downstream 348733 58702320 ~ 58710755 (+) True XLOC_025845

Expression Profile

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