RNA id: TCONS_00050704


Basic Information

Item Value
RNA id TCONS_00050704
length 1705
RNA type mRNA
GC content 0.52
exon number 12
gene id XLOC_025829
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 58379450 ~ 58416968 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

caaacagttttggagaatttaatgttttcTCATTCAAAGAGTGACCTGACCAATACCTTTAAATACCTGCTACACCCCCAAATCGTCTCCAGAAAAAATTTCTTTCTGTATTTTCCTTTTCCGACAACTGAACTAATTTCGCGCCTCGTGGGACTATTCGACTATTCAACCACAAAATCGAGCAGGACACAAGAACTCCTAAAGGATCTCCAACCTCCACGTGCATCAAGAAAAAGAGAACTGGAGGCATCTGAACCCACGTGTGCATTATGAAGGAGAACAGGTCCTCGTGTCAGATGGAGCAGCTGCCCTGTGCATGTCTACTGGACTGCCACAGGCAGACCCACTCCCGCAGCGCCGCCGCCACCATCCCTCTCAGGCACAGAGCTAACGGGGCTGTGGGCGCCTTGTGCAGCAGTCCCAACTGTGTGGTGTCCGACAGGCTGGAGGACTCGGGGAAAGGGCGGTTCGGGACCGGCAGGGTGCTGGTCACAGGGGGAGCCGGGTACTTCGGATACAGACTGGGCCGTGCTCTGGCCAGACAGGGGGCCGCCGTGGTGCTGCTGGATCTCCACCAGCCGCCCTGGGACATCCCCGATGGAGCCGTCTTCCAGCAGATCGACATTCGGGATTATGATACTCTGTATAAGATCAGTGCAGGAGTGGACGTCATATTTCACACTGCGTCCTATGGGATGTCAGGACCTGAACAGCTGAGGAAAAAGCAGATCGAGTCAGTTAACGTTGGCGGCACAAACAATGTCATAAATGTGTGTGCGGAGCGGGGCATCTCCAGACTCATCTACACCAGCACAGTGAATGTGGCGTTTGCCGGACGGCCCATTGAGGATGGAGATGAAGACTCAGTACCCTGTGTGCCGCTAGACATGCACATCGACCATTACTCCAGGACTAAAGCTATCGCTGAGCGCATGGTGCTCGCTGCCAATAGGAGATCAACAAAAGgTGGTGGTCTTCTACACACATGTGTCCTGCGCCCCTCTGGTATCTACGGTCCTGAAGAGAGAAGGCATTTACACCGAGTGATGGTAAACGTGGAAAGACGGTTCTTCAGCTTTTGTTTTGGGGACCCCAATGCCAAGATGAACTGGGTGCATGTGGATAATCTGGTGACGGCGCATGTTTTAGCAGCACAAGCACTTACTGCGGAGAAAGCCTTTGTGGCGAGTGGCCAGGCGTACTTCATCAATGATGGGGAGTCGGTTAATGTCTTTGAATGGCTAACACCACTGTTTGAAAGACTGGGTTACGGTCGGCCACTGATTCACCTTCCTGTGTCTCTGGTCTACTCAGCAGCCATTCTGATGGAGCGGCTGCATGTGGCTTTGAGACCTATAGTGGAAATCCCTTTGCTTCTGACCAGAAATGAGGTGAGGAACATCGCAGTCAGTCACACCTTCAAGATCGAGAAGGCTCAGCGTGATCTGGGCTTCAGTCCTCAGAGATTCAGCCTGAAGGATTCGGTGGATCAGTATCTGCAGAGTCGACCGGTGCGCTCTGCCTCGTCCTTCAGCGCACAACAcctgatgctgctgctgctgatctGCGGGTTCTTCGCTCTCTTCATGCACTGCTTAGCCTGAAAATGGCAAGCCTCACGTACAAACAAAAGCTAGCTGAGTTTCAGTTAAAAGGGGCcagttatgcaaaaatcacttttataaggggtttaggCACAGTTGTG

Function

GO:

id name namespace
GO:0006694 steroid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor molecular_function
GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-101203-3 Predicted to enable oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor. Predicted to act upstream of or within steroid biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SDR42E2 (short chain dehydrogenase/reductase family 42E, member 2).

Ensembl:

ensembl_id ENSDART00000155759

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00050702 lncRNA upstream 25863 58344862 ~ 58353587 (+) True XLOC_025827
TCONS_00052822 lncRNA upstream 73572 58300242 ~ 58305878 (+) False XLOC_025826
TCONS_00052823 lncRNA upstream 73572 58300254 ~ 58305878 (+) True XLOC_025826
TCONS_00052821 lncRNA upstream 76087 58300038 ~ 58303363 (+) False XLOC_025826
TCONS_00052820 lncRNA upstream 166764 58211305 ~ 58212686 (+) True XLOC_025824
TCONS_00052389 lncRNA downstream 8032 58425000 ~ 58429124 (+) True XLOC_025830
TCONS_00050707 lncRNA downstream 52967 58469935 ~ 58470519 (+) True XLOC_025832
TCONS_00052824 lncRNA downstream 137462 58554430 ~ 58595650 (+) True XLOC_025834
TCONS_00052825 lncRNA downstream 163621 58580589 ~ 58615939 (+) True XLOC_025835
TCONS_00052826 lncRNA downstream 171236 58588204 ~ 58624381 (+) True XLOC_025836
TCONS_00050703 mRNA upstream 6799 58354852 ~ 58372651 (+) True XLOC_025828
TCONS_00050701 mRNA upstream 86954 58231560 ~ 58292496 (+) True XLOC_025825
TCONS_00050698 mRNA upstream 194420 58167303 ~ 58185030 (+) False XLOC_025821
TCONS_00050697 mRNA upstream 201289 58167288 ~ 58178161 (+) False XLOC_025821
TCONS_00050696 mRNA upstream 224961 58133227 ~ 58154489 (+) False XLOC_025820
TCONS_00050706 mRNA downstream 38460 58455428 ~ 58468835 (+) True XLOC_025831
TCONS_00050708 mRNA downstream 55337 58472305 ~ 58487848 (+) True XLOC_025833
TCONS_00050710 mRNA downstream 238407 58655375 ~ 58659343 (+) True XLOC_025838
TCONS_00050711 mRNA downstream 239344 58656312 ~ 58656994 (+) True XLOC_025839
TCONS_00050712 mRNA downstream 246974 58663942 ~ 58665324 (+) True XLOC_025840
TCONS_00050699 other upstream 209036 58168523 ~ 58170414 (+) False XLOC_025821
TCONS_00050692 other upstream 380891 57997990 ~ 57998559 (+) False XLOC_025817
TCONS_00050688 other upstream 549531 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050682 other upstream 740002 57636374 ~ 57639448 (+) False XLOC_025808
TCONS_00050664 other upstream 2895803 55483513 ~ 55483647 (+) True XLOC_025789
TCONS_00050717 other downstream 285352 58702320 ~ 58710755 (+) True XLOC_025845

Expression Profile

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