Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00050705 |
| length | 1308 |
| RNA type | mRNA |
| GC content | 0.55 |
| exon number | 11 |
| gene id | XLOC_025829 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 58379450 ~ 58416968 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006694 | steroid biosynthetic process | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0016491 | oxidoreductase activity | molecular_function |
| GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | molecular_function |
| GO:0003854 | 3-beta-hydroxy-delta5-steroid dehydrogenase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-101203-3 | Predicted to enable oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor. Predicted to act upstream of or within steroid biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SDR42E2 (short chain dehydrogenase/reductase family 42E, member 2). |
| ensembl_id | ENSDART00000083850 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00050702 | lncRNA | upstream | 28985 | 58344862 ~ 58353587 (+) | True | XLOC_025827 |
| TCONS_00052822 | lncRNA | upstream | 76694 | 58300242 ~ 58305878 (+) | False | XLOC_025826 |
| TCONS_00052823 | lncRNA | upstream | 76694 | 58300254 ~ 58305878 (+) | True | XLOC_025826 |
| TCONS_00052821 | lncRNA | upstream | 79209 | 58300038 ~ 58303363 (+) | False | XLOC_025826 |
| TCONS_00052820 | lncRNA | upstream | 169886 | 58211305 ~ 58212686 (+) | True | XLOC_025824 |
| TCONS_00052389 | lncRNA | downstream | 8133 | 58425000 ~ 58429124 (+) | True | XLOC_025830 |
| TCONS_00050707 | lncRNA | downstream | 53068 | 58469935 ~ 58470519 (+) | True | XLOC_025832 |
| TCONS_00052824 | lncRNA | downstream | 137563 | 58554430 ~ 58595650 (+) | True | XLOC_025834 |
| TCONS_00052825 | lncRNA | downstream | 163722 | 58580589 ~ 58615939 (+) | True | XLOC_025835 |
| TCONS_00052826 | lncRNA | downstream | 171337 | 58588204 ~ 58624381 (+) | True | XLOC_025836 |
| TCONS_00050703 | mRNA | upstream | 9921 | 58354852 ~ 58372651 (+) | True | XLOC_025828 |
| TCONS_00050701 | mRNA | upstream | 90076 | 58231560 ~ 58292496 (+) | True | XLOC_025825 |
| TCONS_00050698 | mRNA | upstream | 197542 | 58167303 ~ 58185030 (+) | False | XLOC_025821 |
| TCONS_00050697 | mRNA | upstream | 204411 | 58167288 ~ 58178161 (+) | False | XLOC_025821 |
| TCONS_00050696 | mRNA | upstream | 228083 | 58133227 ~ 58154489 (+) | False | XLOC_025820 |
| TCONS_00050706 | mRNA | downstream | 38561 | 58455428 ~ 58468835 (+) | True | XLOC_025831 |
| TCONS_00050708 | mRNA | downstream | 55438 | 58472305 ~ 58487848 (+) | True | XLOC_025833 |
| TCONS_00050710 | mRNA | downstream | 238508 | 58655375 ~ 58659343 (+) | True | XLOC_025838 |
| TCONS_00050711 | mRNA | downstream | 239445 | 58656312 ~ 58656994 (+) | True | XLOC_025839 |
| TCONS_00050712 | mRNA | downstream | 247075 | 58663942 ~ 58665324 (+) | True | XLOC_025840 |
| TCONS_00050699 | other | upstream | 212158 | 58168523 ~ 58170414 (+) | False | XLOC_025821 |
| TCONS_00050692 | other | upstream | 384013 | 57997990 ~ 57998559 (+) | False | XLOC_025817 |
| TCONS_00050688 | other | upstream | 552653 | 57825939 ~ 57829919 (+) | True | XLOC_025812 |
| TCONS_00050682 | other | upstream | 743124 | 57636374 ~ 57639448 (+) | False | XLOC_025808 |
| TCONS_00050664 | other | upstream | 2898925 | 55483513 ~ 55483647 (+) | True | XLOC_025789 |
| TCONS_00050717 | other | downstream | 285453 | 58702320 ~ 58710755 (+) | True | XLOC_025845 |
