RNA id: TCONS_00052826


Basic Information

Item Value
RNA id TCONS_00052826
length 747
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id XLOC_025836
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 58588204 ~ 58624381 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCATGACTGAAACTGATTGTTGGAAAAATTGAGAGCACTGAGTGAAAAGCCATACAAAATCAACCCCACACACTAAAATGCTCAGAACGCACACATTTACTACCATCTAAAGATCTAAAGTCATACTCACGTGCAAATTGACCAGGGAATATTTGTATGTCTGGGTGACCAGTGGAGAGTTTGAGGTGAAACTGAGGAACAGTGTGGGGAGATGGAGAATCCTGCTGGATGCGAAGGGGTGAAGGGTCTGGATACAGACAGAGACCCTGAAGACTGTGGTGGAGCTGGTGGGTTGACAGACCAAGCTGGAGCCTGCGGGACGAATGACCATTGAGAAGAccaccactgagccactgcatcCATAAGCTGAGCTGGAGAAACAGGCCTGAAGGTCTGCAGTGAAGCTTGATGATTGTGAGGCCAGAGCTGAGATCTTGTCTCATTCATCCATAGTTCATTTTCAAAAGACCAGGGCTGAGGTCTTGTCTCGTTCCTCTGTTGTTCACTTTCATGAAGCCAGGGCTGAGATCTTGTCTCGTTCCTCTGTTGTTCACTTTCATGAGGCCAGGGCTGAGGTCTTGTCTCGTTCCTCTGTTGTTCACTTTCATGAGGCCAGGGCTGAGGTCTTGTCTCGTTCCTCCATAGTTCACTTTCATGAGGCCAGGGCTGAGGTCTTGTCTCATTCCTCCATAGTTCACTTTCATGAGGCCAGAGCTGTTGTCCTGTTTGCTTCATCCATAGATCACT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00050707 lncRNA upstream 117685 58469935 ~ 58470519 (+) True XLOC_025832
TCONS_00052389 lncRNA upstream 159080 58425000 ~ 58429124 (+) True XLOC_025830
TCONS_00050702 lncRNA upstream 234617 58344862 ~ 58353587 (+) True XLOC_025827
TCONS_00052822 lncRNA upstream 282326 58300242 ~ 58305878 (+) False XLOC_025826
TCONS_00052827 lncRNA downstream 30143 58654524 ~ 58680069 (+) False XLOC_025837
TCONS_00050709 lncRNA downstream 30217 58654598 ~ 58680069 (+) False XLOC_025837
TCONS_00050713 lncRNA downstream 43593 58667974 ~ 58669493 (+) True XLOC_025841
TCONS_00050714 lncRNA downstream 45193 58669574 ~ 58673206 (+) True XLOC_025842
TCONS_00050715 lncRNA downstream 51607 58675988 ~ 58679887 (+) False XLOC_025837
TCONS_00050708 mRNA upstream 100356 58472305 ~ 58487848 (+) True XLOC_025833
TCONS_00050706 mRNA upstream 119369 58455428 ~ 58468835 (+) True XLOC_025831
TCONS_00050704 mRNA upstream 171236 58379450 ~ 58416968 (+) False XLOC_025829
TCONS_00050705 mRNA upstream 171337 58382572 ~ 58416867 (+) True XLOC_025829
TCONS_00050703 mRNA upstream 215553 58354852 ~ 58372651 (+) True XLOC_025828
TCONS_00050710 mRNA downstream 30994 58655375 ~ 58659343 (+) True XLOC_025838
TCONS_00050711 mRNA downstream 31931 58656312 ~ 58656994 (+) True XLOC_025839
TCONS_00050712 mRNA downstream 39561 58663942 ~ 58665324 (+) True XLOC_025840
TCONS_00050718 mRNA downstream 208925 58833306 ~ 58835177 (+) True XLOC_025849
TCONS_00050721 mRNA downstream 360082 58984463 ~ 58989816 (+) True XLOC_025852
TCONS_00050699 other upstream 417790 58168523 ~ 58170414 (+) False XLOC_025821
TCONS_00050692 other upstream 589645 57997990 ~ 57998559 (+) False XLOC_025817
TCONS_00050688 other upstream 758285 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050682 other upstream 948756 57636374 ~ 57639448 (+) False XLOC_025808
TCONS_00050664 other upstream 3104557 55483513 ~ 55483647 (+) True XLOC_025789
TCONS_00050717 other downstream 77939 58702320 ~ 58710755 (+) True XLOC_025845