RNA id: TCONS_00052827


Basic Information

Item Value
RNA id TCONS_00052827
length 744
lncRNA type read_through
GC content 0.46
exon number 4
gene id XLOC_025837
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 58654524 ~ 58680069 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTCCTCATGTCTGATGGACAGTTTAAAGTGTTGGACACACGATCTCATTGGAGTGACTGTAGTGACTCAGAGTCCAGTAATCACAGTCAGTAAAGGACAAACCGCTCAACTGGACTGTAATCTGGGGACAGTGACTGATTCTGGTGTTAGATGACTGAGGAGGTTTTTGTACGGCTGAACATATCAAATCTTTCACTGTGGTATTCGGACAAGGAACTAAACTCATTGTGACGGACGCTGCTGCTGCTCCTCCTGTGCTCACCATCCTCCGTCCATCATCCAGAGAAGAGCTGAGCTCCAGTAAAGTCACTCTGCTGTGTCTGATCAATCACATGTCTGTGGCTTTCGCTGATGTGCGTTGGCTTGTGAACGGGAACTCGGTTACCGAAGGCGTCTTCACCGGCTCTGCTGAACAGCAGCCTGATCACAAATTCAAGAGCAGCAGTTCTTTAACCATCCAGAGGTCCGAGTGGGACAAAGACAGAGAGCTGACATGTGAAGCCACTGTGGCCTCCAAAACCAGCAGAGCAAGCATCAGGAAATCTGAATGCAGCGACTGAACCTGGAGAAGCGGATGTGCTGTTCTACTGTTATCAGAGCTGATCATATCTCTTGCTGGAGTGGCTCATCAATATAGAGAGTGTTCAAATAAAGCCTCCTCATTTTCTGCTGATGATCTTTCACCTTTAATGTTGATGTGAGCTGATTTACAACTGTTTTAATAAACTGCATCTTTAACAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052826 lncRNA upstream 30143 58588204 ~ 58624381 (+) True XLOC_025836
TCONS_00052825 lncRNA upstream 38585 58580589 ~ 58615939 (+) True XLOC_025835
TCONS_00052824 lncRNA upstream 58874 58554430 ~ 58595650 (+) True XLOC_025834
TCONS_00050707 lncRNA upstream 184005 58469935 ~ 58470519 (+) True XLOC_025832
TCONS_00052389 lncRNA upstream 225400 58425000 ~ 58429124 (+) True XLOC_025830
TCONS_00052828 lncRNA downstream 2488 58682557 ~ 58682886 (+) True XLOC_025843
TCONS_00050716 lncRNA downstream 14107 58694176 ~ 58695037 (+) True XLOC_025844
TCONS_00052829 lncRNA downstream 30985 58711054 ~ 58712370 (+) True XLOC_025846
TCONS_00052832 lncRNA downstream 32631 58712700 ~ 58715206 (+) False XLOC_025847
TCONS_00052831 lncRNA downstream 32631 58712700 ~ 58715206 (+) False XLOC_025847
TCONS_00050708 mRNA upstream 166676 58472305 ~ 58487848 (+) True XLOC_025833
TCONS_00050706 mRNA upstream 185689 58455428 ~ 58468835 (+) True XLOC_025831
TCONS_00050704 mRNA upstream 237556 58379450 ~ 58416968 (+) False XLOC_025829
TCONS_00050705 mRNA upstream 237657 58382572 ~ 58416867 (+) True XLOC_025829
TCONS_00050703 mRNA upstream 281873 58354852 ~ 58372651 (+) True XLOC_025828
TCONS_00050718 mRNA downstream 153237 58833306 ~ 58835177 (+) True XLOC_025849
TCONS_00050721 mRNA downstream 304394 58984463 ~ 58989816 (+) True XLOC_025852
TCONS_00050722 mRNA downstream 371434 59051503 ~ 59052994 (+) True XLOC_025854
TCONS_00050723 mRNA downstream 437067 59117136 ~ 59167824 (+) True XLOC_025855
TCONS_00050724 mRNA downstream 731887 59411956 ~ 60282238 (+) False XLOC_025857
TCONS_00050699 other upstream 484110 58168523 ~ 58170414 (+) False XLOC_025821
TCONS_00050692 other upstream 655965 57997990 ~ 57998559 (+) False XLOC_025817
TCONS_00050688 other upstream 824605 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050682 other upstream 1015076 57636374 ~ 57639448 (+) False XLOC_025808
TCONS_00050664 other upstream 3170877 55483513 ~ 55483647 (+) True XLOC_025789
TCONS_00050717 other downstream 22251 58702320 ~ 58710755 (+) True XLOC_025845