RNA id: XM_021578226.2


Basic Information

Item Value
RNA id XM_021578226.2
length 3127
RNA type mRNA
GC content 0.52
exon number 10
gene id LOC110500710
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 53094313 ~ 53103236 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAAAGGGGTCTCGTTCAAACACGTTTAAACTGAGCGCCGGGTGCGCAGCCTAGTAGAGCTGCAAATACTTTGAACTGTCTAATCTTCGATTAAGCACgactctgcattgttggtagCTATTTGAAGGCGCGCCAAAGTTCTGACACATTTGAACAGACCGAATACAGTCATAGAACTGCGCGGCAAAAGCAAGGCACAAACAAAAACATGTGGATGTAGCATTGAACTAACGGCCCCTATGACATCACTGCAGCAGAGAGTGGAGAAGACACACCGGCCTAGTGAGTGACTGCGAGCTGTGAAGGAGGAGAGGGTTCGACATGGGACTACACTCAGCCCAGAAGAAACACTTTCCCCTAAAGGGGATCGATGGTGTGGTTGCGTTGTTCGATGCGGAGCTCCGTAAACCCGAACCGGACCTGGCCCTTCTCTCATTGGTCCTGGGCTTCGTTGAACACTTCCTGGCCGTGAACCGGGTCATACCAATAAACGTCCCGGGGGTGCGCTTCGAGCCACTGGAGCCCGACTGTCCAAACTCCTGCTTCCCTACAGTGGAGTTAGGGATGCTGTCGGCCCTACGTGAGCGTTTTACTGCCCAAATCCGGGGAGCAGTGGACCTGTCTCAGTACCGCAGGCCTGCTGGTGGATCCAGCAGGGAACTGGTGAAGAAGGTGTCTGACGTCATCTGGAACAGCCTGAGCCGCTCCTACTTTAAGGACCGCGCCCACATCCAATCCCTCTTCAGTCTCATCACAGGCACAAAGCTGGACAGCTCGGGGGTGGCATTTGCAGTGGTGGCAGCGTGCCAGGTTCTGGGGCTGCGGGACGTGCACCTCGCCCTGTCCGAGGACCATGCCTGGGTCATCTTTGGCAAGAACGGAGAGGAGACCGCTGAGGTCACCTGGCACGGCAAGGGCAACGAGGACCGGAGGGGGCAGACAGTTGCCGCCGGTGTCGGCGAGAGGGTAAGTAAGaGCTGGCTGTACCTGAAGGGCTCCTATATGAAGTGTAACAGGAACATGGAGGTGGCCTTCATGGTGTGTGCCATTAACCCTTCACTGGACCTGCACACTGACAGCTCTGAGATGCTACAGCTTCAACAGAGGCTTCTATGGCTGCTCTATGAGCGAGGAGACCTGGAAAGATACCCCATGGCCATGGGCACCCTGGCTGACCTGGAGGACCAGGAGCCCCTCCCTGGCAAAGAGAACCCCTACACCATCCACCTTCAAGCTGTGAACTCTGCTAAGAAGTACTACAACAACGAACACATCTACCCTTTCATGTACCTGGCTGGCTACCACTACAGACACAGGGAGGTCCGGGAGGCACTGGGGGCCTGGGCCGAGGCTGCACAGGTCATGCAGGACTACAACTACTTCCGTGAGGACGAAGAGATCTACAAGGAATTTTTTGACATCGCCAACGACGTCATCCCCACCCTGCTGAAGGAGACGGCTGCAGCTGCCGAGAgcggaggggagggaggagaaaagGACCAGCCCATACAGGCCGCCGCCCTCTCGGCCCTCCAGGACCCAGAATGCTTTGCCCACCTGTTGCGGTTTTATGACGGTATCTGTAAGTGGGAGGAGGGAAGCCCCACCCCTGTCCTCCACGTGGGCTGGGCCACCTACCTGGTCCAGTCCCTCAGTCGTTTTGACGCACAGATTCGTCAGAAAGTGTCTATCATCACCAAAGAGCTGGAGCCCCAGGATGACGACGACCAATCCAGCGAGGACCCCCGCGAGGGGCGAAGACGTGGGCCGAGACGTGAGTCCAAACTGGAAGACCAAGCTTCCCCTCCTACACAATCCACCACCCCTGTCCCACCACCAACCCAGCCCGCCCAGGCCAAGAAAGTAGGTGGGGAGGGCGGGACGCGGCGTCGCTCCTCAGGACTCCGTGGTGGAGACCCAGAAGGCAAGGCCAAGTCCCCCAGCCCAGTGCCCTCTCCTGCCCAACAGCTGCCTTCCCCCAGCATGGGTCCCCTGGTGGCCTTCCAGAGCAAGAAGATGAAAGGCATGAAGGAGCTGCTGTCGGCAGCCAAGATCAACTCCAGTGCCATCAAGCTCCAGCTCACCGCCCAGTCACAGGTTCAAATGAAGAGGCAGAAGAGCACGCAGTCGGGAGACTACACCATGTCATTCATGAAGCGCCAGCGCAAATCTCTGTAGAAGGAGAACTCTGGCTGTAGAACTTTCTCCAGCCTGGTTCCCATGTCTGGTTGTGTTGTATAGCCAACTCCCATGGTCATTGTCATAGGAGTgtctatacagcacaaacagatctggaaccaggctagagTTTCCATTGGGAGAAAAACAAAGGGAGACTGACTGTAGGACCGACTGAGAGGCAAGGCAATACACACAACTGATGCATCAGCGAtgagcttttttttatttttttatttttaaggttATTTTAGCAATCATATCATAAGTCCTGTTAAGGTCATGAGAGGGTCGGTAAGAACATGACACACGTGTCCATGTGGAGGAAGTCACTTTAATCAAGTTTGAACAGATTTGTCAACCAAGTCATTCTTTTTAATCTTGTGATTCAATAATGATTGTGTATCATAGGCCGTTAAAACATTCAATTGCTGTCACTTTGTGTGGCTCTAATGGGCAGTAGTGCACATCAACTCTGAGTACTCACTGATTTATGTGTAAGAAGCTCTGTAAAGAGCTTGTAAAGCCAAAGTAATGGTGAAAACACCCTGTCCCGGAACCTGTTTTGGAATGGGGGAATTGCTCCGTTAGAAAGCAGTCTGAATTCCATTCTATATTTTCTGCCCTTGAATCTTAAGTTTCATCTTTTTGATTGAAATCCCTGGAAGTGATTCGGACTATTACTGTGTAACAATGTCCAACTCTGTTACGTTGGCTCTTTATATGCTAGCTATTTGTTGCCTTATACTTTGCCTTTTTTTTGTTCTAATGTAGGTGGCCTTCAGTTGAGACTAGCCAGAGCTGCAATAGGCAATAGAAAGTGACCAGAAAGACCACACACTGTTTATAATGGGATTGCTGTAGGTGTCCCAGGTAGCTACATTCAGTAGTATTTTGCTtgataacttgtttttttttaatctgcaGATAATAAAATAAGTTAAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2006144 lncRNA downstream 51062 53043008 ~ 53043251 (-) True G1752123
TU2006143 lncRNA downstream 66145 53027966 ~ 53028168 (-) True G1752122
TU2006079 lncRNA downstream 84933 53008706 ~ 53009380 (-) True LOC110500705
TU2006080 lncRNA downstream 97219 52989323 ~ 52997094 (-) False LOC110500886
TU2006108 lncRNA upstream 56438 53159674 ~ 53160072 (-) True G1752089
TU2006111 lncRNA upstream 57694 53160930 ~ 53161421 (-) False LOC110500716
TU2006097 lncRNA upstream 58808 53162044 ~ 53163987 (-) True LOC110500716
TU2006213 lncRNA upstream 157705 53260941 ~ 53261633 (-) True G1752191
TU2006215 lncRNA upstream 160547 53263783 ~ 53264046 (-) True G1752193
XM_021578219.2 mRNA downstream 154 53067865 ~ 53094159 (-) False LOC110500709
XM_021578220.2 mRNA downstream 154 53067865 ~ 53094159 (-) True LOC110500709
XM_036958155.1 mRNA downstream 34544 53050824 ~ 53059769 (-) False LOC110500707
XM_036958156.1 mRNA downstream 34750 53050824 ~ 53059563 (-) False LOC110500707
XM_021578231.2 mRNA upstream 37497 53140733 ~ 53148064 (-) True si:dkey-106g10.7
XR_002470150.2 mRNA upstream 58080 53161316 ~ 53164050 (-) False LOC110500716
XM_036958183.1 mRNA upstream 266901 53370137 ~ 53405732 (-) False LOC110500888
XM_036958182.1 mRNA upstream 266902 53370138 ~ 53405736 (-) False LOC110500888
XM_036958181.1 mRNA upstream 266902 53370138 ~ 53405741 (-) False LOC110500888
TU2005044 other downstream 965995 52127998 ~ 52128318 (-) True G1751128
TU2004532 other downstream 1593100 51485700 ~ 51501213 (-) True c21h11orf68
TU2004429 other downstream 1857150 51236885 ~ 51237163 (-) True G1750625
TU2004288 other downstream 2045225 51036703 ~ 51049088 (-) True LOC110500668
TU2002707 other downstream 2541788 50542620 ~ 50552525 (-) True G1749122
TU2006262 other upstream 271433 53374669 ~ 53405684 (-) False LOC110500888
TU2006263 other upstream 271433 53374669 ~ 53405684 (-) True LOC110500888
TU2006299 other upstream 315164 53418400 ~ 53419325 (-) True G1752268
TU2006353 other upstream 399683 53502919 ~ 53504958 (-) False G1752321
TU2006354 other upstream 399683 53502919 ~ 53505011 (-) False G1752321

Expression Profile