RNA id: TCONS_00005747


Basic Information

Item Value
RNA id TCONS_00005747
length 854
lncRNA type read_through
GC content 0.36
exon number 3
gene id XLOC_002586
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 7883753 ~ 7886040 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atttattagagcagctgtcgatgtgggcaggtgttcataaaacgtgattttaatagtttggcgtgactcctttttcattgcccgggatttagcagccagacgcagcttctgcaatggtcgacattaactgctcccagcagcggatctgattaacacgataccaaagtgattttgttacctgtggatcttcaaacttcacatccagagttgtgaggaatcagaggtgcatgcaGCTGCCCACAagaaaaatttgccatcagcccaacacagtttggattatcataggactgtcagaggtttgccaaacctgtcaaatgcatgatggctcctgtttggacttaccaatgtcctcgacttcaagtatccatcaaaactgtatacatttaagatgtattagagactctttgtgggactggacattatgcatccaaaatcttcatcaaaatatgcaaatctcctcactgagttgccttggatgatttctcaataggatctggtattattaatgtttttatttatgtattgtgtacgtgtagccacattaatggcctattttgtagtcactattaaaaggaacattgattgatattgaatacatgttatggtctttaatccatcttcccattcttatttaattgttattgacaggaaagtctgtttatctgtgtttactagtgtatattgtgcttacaatatagaaacgccgatttattttctgaggttacagccagaagtcaattaaattcgttttaaatgacatatgcatggttaattttatttagatcattaagttcataatacttaattaaaatgagtacagtcaacatatagcaatgtataagtaagttaagttt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004807 lncRNA downstream 62211 7814644 ~ 7821542 (-) True XLOC_002583
TCONS_00004808 lncRNA downstream 63278 7814644 ~ 7820475 (-) False XLOC_002583
TCONS_00004806 lncRNA downstream 71999 7810664 ~ 7811754 (-) False XLOC_002583
TCONS_00004805 lncRNA downstream 72365 7810664 ~ 7811388 (-) False XLOC_002583
TCONS_00004803 lncRNA downstream 101731 7779638 ~ 7782022 (-) True XLOC_002582
TCONS_00004821 lncRNA upstream 90308 7976348 ~ 7979724 (-) False XLOC_002589
TCONS_00004822 lncRNA upstream 90929 7976969 ~ 7979995 (-) False XLOC_002589
TCONS_00005749 lncRNA upstream 95079 7981119 ~ 7983744 (-) True XLOC_002590
TCONS_00004828 lncRNA upstream 159377 8045417 ~ 8046763 (-) True XLOC_002593
TCONS_00004840 lncRNA upstream 380231 8266271 ~ 8269833 (-) False XLOC_002599
TCONS_00004809 mRNA downstream 25200 7831439 ~ 7858553 (-) False XLOC_002584
TCONS_00004810 mRNA downstream 26259 7834188 ~ 7857494 (-) True XLOC_002584
TCONS_00004804 mRNA downstream 62067 7810455 ~ 7821686 (-) False XLOC_002583
TCONS_00004802 mRNA downstream 97808 7778870 ~ 7785945 (-) False XLOC_002582
TCONS_00004801 mRNA downstream 97823 7778870 ~ 7785930 (-) False XLOC_002582
TCONS_00004815 mRNA upstream 14972 7901012 ~ 7909839 (-) False XLOC_002587
TCONS_00004816 mRNA upstream 16305 7902345 ~ 7913591 (-) True XLOC_002587
TCONS_00004817 mRNA upstream 30680 7916720 ~ 7974155 (-) False XLOC_002588
TCONS_00004818 mRNA upstream 31978 7918018 ~ 7974155 (-) False XLOC_002588
TCONS_00004820 mRNA upstream 89545 7975585 ~ 7988417 (-) False XLOC_002589
TCONS_00004790 other downstream 371630 7512008 ~ 7512123 (-) True XLOC_002575
TCONS_00004786 other downstream 531643 7290947 ~ 7352110 (-) True XLOC_002573
TCONS_00004780 other downstream 874263 7009374 ~ 7009490 (-) True XLOC_002570
TCONS_00004776 other downstream 1066987 6786333 ~ 6816766 (-) False XLOC_002568
TCONS_00004819 other upstream 43731 7929771 ~ 7959838 (-) True XLOC_002588
TCONS_00004848 other upstream 789850 8675890 ~ 8677828 (-) True XLOC_002605
TCONS_00004855 other upstream 1130681 9016721 ~ 9016837 (-) True XLOC_002609
TCONS_00004856 other upstream 1151318 9037358 ~ 9089636 (-) False XLOC_002608
TCONS_00004859 other upstream 1255525 9141565 ~ 9141679 (-) True XLOC_002611

Expression Profile

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