RNA id: TCONS_00052834


Basic Information

Item Value
RNA id TCONS_00052834
length 567
lncRNA type inter_gene
GC content 0.31
exon number 2
gene id XLOC_025850
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 58835461 ~ 58857483 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCAACACTTATGAAAGAATCTGAAGTGCTGAAAGCTGCTTTCATTACAGAAATGTCCACTTCCCTAAAATATTGAGTCAAATTAGATTCACTCAGTGAAGCATGAAAACACCTGCAGAGGAGATGAAGACACCAGAAAGTCTCTAAACAGCAAAGACACAAAGGAACCATGAAATAATGTATATAAcctataaatattacaaactatGAAGTTTACAAACTTTTAAAGCCACTATAATGAGGAATAAATGAGAATAATGTAGAATAATAAACTCAGAAGTACGACTAAGTGAACcatatttaaagttaattttatgatACAAAGTGAACAAAACAAACTAAGCAACTTTGCTtggcaaaaacatcaacaatGAGGAAGAAACAATCTCACTAAACACAGAAGCACATGACTAGATAACATGAGGGAAAGGGAATCACATGAGTGGGTAAAACtgtaataactacacactatgaatcatttaataagcattagcaaatagtgaattcataatttgttaagcattaatgctacattaataacattagttaagcagtttataactgcag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052833 lncRNA upstream 23628 58806215 ~ 58811833 (+) True XLOC_025848
TCONS_00052832 lncRNA upstream 120255 58712700 ~ 58715206 (+) False XLOC_025847
TCONS_00052831 lncRNA upstream 120255 58712700 ~ 58715206 (+) False XLOC_025847
TCONS_00052830 lncRNA upstream 120255 58712700 ~ 58715206 (+) True XLOC_025847
TCONS_00052829 lncRNA upstream 123091 58711054 ~ 58712370 (+) True XLOC_025846
TCONS_00050720 lncRNA downstream 104421 58961904 ~ 58967097 (+) False XLOC_025851
TCONS_00050719 lncRNA downstream 104421 58961904 ~ 58967097 (+) True XLOC_025851
TCONS_00052391 lncRNA downstream 167451 59024934 ~ 59027837 (+) True XLOC_025853
TCONS_00052392 lncRNA downstream 354677 59212160 ~ 59224196 (+) True XLOC_025856
TCONS_00052393 lncRNA downstream 1023452 59880935 ~ 59887301 (+) False XLOC_025861
TCONS_00050718 mRNA upstream 284 58833306 ~ 58835177 (+) True XLOC_025849
TCONS_00050712 mRNA upstream 170137 58663942 ~ 58665324 (+) True XLOC_025840
TCONS_00050710 mRNA upstream 176118 58655375 ~ 58659343 (+) True XLOC_025838
TCONS_00050711 mRNA upstream 178467 58656312 ~ 58656994 (+) True XLOC_025839
TCONS_00050708 mRNA upstream 347613 58472305 ~ 58487848 (+) True XLOC_025833
TCONS_00050721 mRNA downstream 126980 58984463 ~ 58989816 (+) True XLOC_025852
TCONS_00050722 mRNA downstream 194020 59051503 ~ 59052994 (+) True XLOC_025854
TCONS_00050723 mRNA downstream 259653 59117136 ~ 59167824 (+) True XLOC_025855
TCONS_00050724 mRNA downstream 554473 59411956 ~ 60282238 (+) False XLOC_025857
TCONS_00050725 mRNA downstream 927149 59784632 ~ 59822428 (+) True XLOC_025858
TCONS_00050717 other upstream 124706 58702320 ~ 58710755 (+) True XLOC_025845
TCONS_00050699 other upstream 665047 58168523 ~ 58170414 (+) False XLOC_025821
TCONS_00050692 other upstream 836902 57997990 ~ 57998559 (+) False XLOC_025817
TCONS_00050688 other upstream 1005542 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050682 other upstream 1196013 57636374 ~ 57639448 (+) False XLOC_025808