RNA id: XM_036958287.1


Basic Information

Item Value
RNA id XM_036958287.1
length 1765
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC110500779
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 58499259 ~ 58508480 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTATTAaaacccttctcctccctcctcgtcCCATTGGTCTTATTaaaactcctctcctcccttctctggATCACTTTCTTCCACCTGATCCCTCGTTCCAAAGACCTAAGGATGGACTGGAGCGCTTACGAGGTAGATCCACTGgatgtccctcctctcacccccacCAGTAAGGAGGTCCTGAGCCAGGCGATAAGGGCCACCTTCGCAGGCTTCGCCCAGGAGAGCAGCCGTATGCACTTCCCACAAGACCCTAAACTGTGGTCAGAGTGGGAGGTGAACCACTGGTTAGACTGGTGCCAGGCTGAGTTCGGGCTCCAAAGCCTGGGCTCGGATTGGAGAGGGCTGCCTGGGAGTGAGCTCTGTACCCTGGACAGAGAGGCCTTCCTGGACCTGAGCTCTGACTACACAGCAGGAGAGATCCTCTGGGAACATCTGGAAACTATGCGCAGAGACAGTTACGTGGACCATGTGCAGCTCATGGACAAGCAGAATCACCATGGTCAGTTCTCCCATCTCCCAATAGAACCCCCACAGCTTCTGACCCTTGACCCTGTGACTGTGAGATATCAGGACTACCACCGGGTCAAACAGGAAGGACCTTACAGAAACCACCTgtcctctgtccctctgctccGAGACCTTGACAGGACAGATTGTGACGTTGGGTTTGGGACCCTGCATTATGAGGACACGGACATCACCGCTTCTCTGTCCTTGACTAGACCAACACAGGGTGTGGAAGAGTCCATTCCTGAGGACCCCTTCAATTTGCCACCCCCACACAGGAGCTTCAAAGAGTTTATCGGGGACAAGACTGATCTGGGTAGAGCTCTGGTTCCGGCAGGCATTCTGTCTGCTTATACTGGCAGTGGTCCCATTCAGCTGTGGCAGTTTCTATTGGAGCTCCTCATTGACCGCAGCTGTCAATCATTTATAATTTGGACAGGGGATGGATGGGAGTTTAAACTGACAGATCCTGACGAGGTGGCCCAGCTATGGGGCCGGAGGAAGAACAAGCCTAAGATGAACTACGAGAAGTTGAGTCGAGGCCTGCGCTACTACTACGACAAGAACATCATCCACAAGAACGCTGGCAAGCGCTACGTCTACCGTTTCGTCTGTGACCTGCAAGGCCTGCTGGGATACGAACCCCGGGAACTGCACGCCATGTTGGATATCACGGCCAAAGGCGGCCATGAGTGAAAGCTGGGAAATGGGCGTTTCCTTTATTCCTCGACCGCTTCTAAACACGCATTGGAGGAGAAGATCCGAGGGGAGGAGCCGTAGAGCGGAAGGGGAGGAACCTCAGATCTTCTCCTCCAATGAGTTTTGAGAAGGAGGTTGAAGAACCAAGGAAAGACTTTTTGAGATTCACCCAGACGTTGGTGCAGACGGCGACGGGTCAAGAGACTGTGTTTACAAAAACTCAACCTCCTTATCATTTGGCAATCATTTCTTTGATCATGGTCAACTGTAAGCTGTGGGGCTTGTATGTTTTTATATGTGATAAGTATATATTCAATACAATTATTGAAGATGTGACCAGAGAAACAGTTTTGTTTAAATTGTTGtttatacagggccttcagaaagtattcaccctctTGACTCTTCCCACGTTTTGTTGGGTTAAAAGGTCGATTAAAAACATTTTGGTCAATGGTCTACACTAAGTACTCTGTGATGTCAAAGTAGAATAAATGTTCTAACATTtgtacaacaaaaacaaaaaataaataaaacgcaTATCTTGATGACTTa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2012299 lncRNA downstream 20678 58477903 ~ 58478581 (-) True G1757421
TU2012268 lncRNA downstream 74037 58424905 ~ 58425222 (-) True G1757391
TU2012263 lncRNA downstream 83104 58415935 ~ 58416155 (-) True G1757386
TU2012255 lncRNA downstream 87575 58409953 ~ 58411684 (-) True G1757378
TU2012138 lncRNA downstream 106733 58391692 ~ 58392526 (-) True G1757279
TU2012321 lncRNA upstream 21258 58529738 ~ 58529956 (-) True G1757440
TU2012322 lncRNA upstream 21574 58530054 ~ 58530286 (-) True G1757441
TU2012326 lncRNA upstream 30580 58539060 ~ 58545895 (-) True G1757445
TU2012327 lncRNA upstream 31060 58539540 ~ 58546221 (-) True G1757446
TU2012335 lncRNA upstream 46613 58555093 ~ 58555347 (-) True G1757454
XM_021578317.2 mRNA downstream 55313 58441167 ~ 58443946 (-) True LOC110500784
XM_036958285.1 mRNA downstream 120784 58372150 ~ 58378475 (-) True LOC118942958
XR_005038661.1 mRNA downstream 301077 58195262 ~ 58198182 (-) False LOC118942959
XM_021578310.2 mRNA upstream 96 58508576 ~ 58512392 (-) False LOC110500778
XM_021578311.2 mRNA upstream 96 58508576 ~ 58512400 (-) True LOC110500778
XM_036958295.1 mRNA upstream 452781 58961261 ~ 59280662 (-) True LOC110500776
XM_021578306.2 mRNA upstream 773689 59282169 ~ 59284125 (-) True LOC110500775
XM_036958297.1 mRNA upstream 866916 59375396 ~ 59440540 (-) False LOC110500772
TU2011956 other downstream 456202 58042650 ~ 58043057 (-) False G1757130
TU2011873 other downstream 590125 57908139 ~ 57909134 (-) True G1757074
TU2011872 other downstream 596666 57902086 ~ 57902593 (-) True G1757073
TU2009892 other downstream 2091941 56406582 ~ 56407318 (-) True G1755322
TU2009879 other downstream 2108693 56390057 ~ 56390566 (-) True G1755310
TU2012593 other upstream 291694 58800174 ~ 58805825 (-) True G1757692
TU2013080 other upstream 683952 59192432 ~ 59195490 (-) True G1758095
TU2014036 other upstream 1515287 60023767 ~ 60024903 (-) True G1758845
TU2014093 other upstream 1614062 60122542 ~ 60123364 (-) True G1758890
TU2014124 other upstream 1679930 60188410 ~ 60225587 (-) True G1758915

Expression Profile