RNA id: TCONS_00050737


Basic Information

Item Value
RNA id TCONS_00050737
length 1659
RNA type mRNA
GC content 0.42
exon number 2
gene id XLOC_025866
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 60044780 ~ 60074605 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTATGAAGTGGATGGAGTATGAGTCGGATCGCTGATGAATGCTAAACTTTGCCGTTTGCTGTATAATTATTCTTCTGTTACGGGTGTTGTGCGTCTTTTCAAAAAGAACGAGATTAGAAGCGGAGATGATGAACTAGTTAAGGTTGGAAATACcttgctaagttttttttttttatgaaaagaaGAGACAAGATTGTTTTTCGCCTGCACTCAGTGTCGAAAGGAATCGATTGGGATGCAAAGTAGCCGTAAGATTTACAAGATGGTCcgcactggagagaaaccaatcaCATGtacccagtgtgggaagagtttctcacaatcatcaaaccttaatagacatatgatgatccacactggagagaaaccacacacatgtacacagtgtggaaagagtttcacacaGTCATCATcgcttaataaacacatgatgatccacactggagagagaccatttatatgcactcagtgtggtaagagtttcacACGATCCTCAAACCTTATTGAACACATgttgattcacactggagagaaacctttcacatgcacccagtgtggaaGGAACTTCAGACAAGCagcacaccttaatcaacacatcgtgatccacactggagagaagccacaCAGATGTGATCAATGTGGTAAAACATTTGCAAGGCGTTCATTTCTGAAGTTTCATCTAAGAGTTCACACAAATGAGAGACCGTATTCATGTTCTGTGTGTGGAAAGAGCTGTACACGGCAGTCGAGTTTAAGaaaacatcagaagatccacactggtgtgagagagcatgtctgctttgagtgtgagaagactttcgTTACAGCTGATGATTTGAAACGGCACcaaaggattcacactggagagaaaccgtacatgtgttcacactgcgacaagagattcagtcagAGTGGAAGCCTGAAAGCACATGAGAGGACTCACTCTGTAATCTGCTAGCCTGACTTGTATGTTTTGTTCCTTTAATCATTCCTCATGATAACCAGTTGTTTTCTAGAGAGTCTTTAAATAGTCTTTAAAAAGGGCTTCGCATCAGGCAGTGTGCTTCTTCACAAAGTCCTCCTGTAGCTTTAAAGGACTCCTATCACGCCAAATCAACTTTCgggagctgtttggacagaactggaGTGATTTAAAGctcttgcacttctgtgatgcaccATTAATGTGGAAAGGATTTTGGAGCACAACGTGCTGCTTTTTTTGCCAGGGGCACCATGCATATTCCAACAAGACactgcaaaaccacattctgcacacattacaaagtcctggatGAGGAGGAAGatgatacaggtacttgactggcctgcctgcagtcctgacctgcctccaatagagaatgtgtgccgcattttgaagtgcaaatcGCAACAATGATGACCTTGTATTGTTTctcaccttaagacttgtttgcaggtaGAATGGGACAAAACTACACCTGAAACTCttcatcacttgctgtcttcagtccctaatcgtcttttaagtgttgtgaaaaggaatggccaCATTACAACGTGGTATGATGCATTTCATTCATGGATGTCCACTCCAGGATTGAGTAACACAAGTCCTTTCTTATGTCTttactactgtatatacacagaTTTGGCTGACTAGTTGATAATGATTAAAGC

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-528 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Is expressed in heart.

Ensembl:

ensembl_id ENSDART00000080437

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052835 lncRNA upstream 883 60037550 ~ 60043897 (+) True XLOC_025865
TCONS_00052394 lncRNA upstream 154514 59883086 ~ 59890266 (+) True XLOC_025861
TCONS_00052393 lncRNA upstream 157479 59880935 ~ 59887301 (+) False XLOC_025861
TCONS_00052392 lncRNA upstream 820584 59212160 ~ 59224196 (+) True XLOC_025856
TCONS_00052391 lncRNA upstream 1016943 59024934 ~ 59027837 (+) True XLOC_025853
TCONS_00052837 lncRNA downstream 281609 60356214 ~ 60357972 (+) True XLOC_025870
TCONS_00052838 lncRNA downstream 308517 60383122 ~ 60401867 (+) True XLOC_025871
TCONS_00052395 lncRNA downstream 313644 60388249 ~ 60388895 (+) True XLOC_025872
TCONS_00052839 lncRNA downstream 363509 60438114 ~ 60439578 (+) True XLOC_025873
TCONS_00052840 lncRNA downstream 468508 60543113 ~ 60544139 (+) False XLOC_025874
TCONS_00050736 mRNA upstream 8295 60034221 ~ 60036485 (+) True XLOC_025864
TCONS_00050733 mRNA upstream 28066 60007703 ~ 60016714 (+) False XLOC_025863
TCONS_00050732 mRNA upstream 28110 60007703 ~ 60016670 (+) False XLOC_025863
TCONS_00050734 mRNA upstream 28641 60007709 ~ 60016139 (+) True XLOC_025863
TCONS_00050730 mRNA upstream 97572 59899452 ~ 59947208 (+) False XLOC_025862
TCONS_00050739 mRNA downstream 103169 60177774 ~ 60226027 (+) True XLOC_025869
TCONS_00050740 mRNA downstream 202695 60277300 ~ 60282382 (+) True XLOC_025857
TCONS_00050741 mRNA downstream 514552 60589157 ~ 60592979 (+) True XLOC_025875
TCONS_00050742 mRNA downstream 532636 60607241 ~ 60624039 (+) True XLOC_025876
TCONS_00050745 mRNA downstream 642299 60716904 ~ 60733722 (+) False XLOC_025879
TCONS_00050717 other upstream 1334025 58702320 ~ 58710755 (+) True XLOC_025845
TCONS_00050699 other upstream 1874366 58168523 ~ 58170414 (+) False XLOC_025821
TCONS_00050692 other upstream 2046221 57997990 ~ 57998559 (+) False XLOC_025817
TCONS_00050688 other upstream 2214861 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050682 other upstream 2405332 57636374 ~ 57639448 (+) False XLOC_025808

Expression Profile

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